Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QNM34_RS21715 Genome accession   NZ_CP126169
Coordinates   4747716..4749251 (+) Length   511 a.a.
NCBI ID   WP_217172318.1    Uniprot ID   -
Organism   Rahnella bonaserana strain L46     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4742716..4754251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNM34_RS21690 (QNM34_21690) - 4742877..4743806 (-) 930 WP_284004270.1 branched-chain amino acid transaminase -
  QNM34_RS21695 (QNM34_21695) ilvM 4743823..4744086 (-) 264 WP_013577547.1 acetolactate synthase 2 small subunit -
  QNM34_RS21700 (QNM34_21700) ilvG 4744083..4745729 (-) 1647 WP_217172320.1 acetolactate synthase 2 catalytic subunit -
  QNM34_RS21705 (QNM34_21705) ilvL 4745877..4745978 (-) 102 WP_015699153.1 ilv operon leader peptide -
  QNM34_RS21710 (QNM34_21710) - 4746111..4747349 (-) 1239 WP_217172319.1 MFS transporter -
  QNM34_RS21715 (QNM34_21715) comM 4747716..4749251 (+) 1536 WP_217172318.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QNM34_RS21720 (QNM34_21720) - 4749277..4749615 (-) 339 WP_217149092.1 DUF413 domain-containing protein -
  QNM34_RS21725 (QNM34_21725) hdfR 4749734..4750558 (+) 825 WP_284004275.1 HTH-type transcriptional regulator HdfR -
  QNM34_RS21730 (QNM34_21730) yjfF 4750570..4751556 (-) 987 WP_217172316.1 galactofuranose ABC transporter, permease protein YjfF -
  QNM34_RS21735 (QNM34_21735) ytfT 4751556..4752575 (-) 1020 WP_217172315.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  QNM34_RS21740 (QNM34_21740) ytfR 4752586..4754067 (-) 1482 WP_284006283.1 galactofuranose ABC transporter, ATP-binding protein YtfR -

Sequence

Protein


Download         Length: 511 a.a.        Molecular weight: 55376.80 Da        Isoelectric Point: 7.6858

>NTDB_id=837025 QNM34_RS21715 WP_217172318.1 4747716..4749251(+) (comM) [Rahnella bonaserana strain L46]
MSLAVVYTRASLGVQAPGVSVEVHISNGLPALTLVGLPETTVKEARDRVRSAIINCGFTFPAKRITVNLAPADLPKEGGR
YDLSIALAILVASDQLQGDKLEKYEFLGELGLSGALRSVNGAIPAALEAQKAGRILILPQNNQTEMTLLDPGVAKVAGHL
LQVCAFMQGEDNLPAIEFPAHPTIPEHQPDISDIIGQEQSKRALEVAAAGGHNLLLIGPPGTGKTMLASRLPGLLPPLTN
EEKLETAAIASLVYNPEEDGGFSRVRPFRAPHHSTSMSALVGGGSLPRPGEISLAHNGVLFLDELPEFQRQVLDALRQPM
ESGEITISRARAKVRYPARAQLIAAMNPSPTGHYQGIHNRTPPQQVLRYLSRLSGPFLDRFDLSIEVPLLPPGILSQQNH
TPALRESSAHVRERVLIAREIQLKRAGKINAHLSSSEVETYCVLTKADAEFLEEVLHKLGLSVRAWHRILKVARTLADLG
GFEAIERRHIAEALSYRSMDRLLLTLHKSLA

Nucleotide


Download         Length: 1536 bp        

>NTDB_id=837025 QNM34_RS21715 WP_217172318.1 4747716..4749251(+) (comM) [Rahnella bonaserana strain L46]
ATGTCATTAGCCGTGGTGTATACCCGCGCCTCACTGGGTGTTCAGGCGCCCGGCGTCTCGGTCGAGGTACATATCAGCAA
CGGTTTACCGGCCCTCACATTGGTCGGTTTACCGGAAACCACCGTTAAAGAAGCCAGAGATCGGGTTCGCAGCGCCATCA
TCAACTGCGGTTTCACCTTTCCGGCAAAACGCATCACCGTAAATCTTGCGCCAGCCGATTTACCTAAAGAAGGCGGCCGG
TATGATTTATCCATTGCGCTGGCGATTCTGGTGGCCTCAGATCAGCTTCAGGGGGATAAGCTTGAGAAGTACGAGTTTCT
GGGGGAACTCGGACTTTCTGGTGCGCTGCGCAGCGTGAATGGCGCGATACCGGCGGCACTTGAAGCGCAGAAAGCAGGCC
GGATATTGATCCTGCCGCAGAATAATCAAACGGAAATGACGCTGCTGGATCCGGGCGTGGCGAAAGTTGCCGGGCATTTG
TTGCAGGTCTGCGCATTTATGCAGGGCGAAGACAATTTGCCGGCCATTGAGTTTCCCGCTCACCCCACTATTCCGGAACA
CCAGCCTGACATTTCAGACATCATCGGGCAGGAACAATCCAAGCGCGCACTGGAGGTGGCGGCAGCAGGCGGGCATAACT
TATTGCTGATCGGACCGCCGGGTACCGGAAAGACCATGCTGGCGAGCCGGTTGCCGGGATTGTTACCCCCGCTGACCAAT
GAGGAAAAATTAGAAACTGCGGCCATCGCCAGTCTGGTGTATAACCCGGAAGAAGACGGCGGATTTTCACGCGTGCGGCC
ATTTCGGGCACCGCATCACAGTACGTCGATGAGTGCGCTGGTCGGCGGGGGCTCGCTGCCCAGACCGGGAGAAATATCGC
TGGCCCATAACGGCGTATTGTTTCTCGACGAACTGCCTGAATTTCAGCGGCAGGTTCTGGATGCTTTGCGCCAGCCAATG
GAATCCGGCGAAATCACGATTTCCCGCGCAAGAGCGAAAGTCCGCTATCCGGCAAGAGCGCAGCTGATTGCAGCGATGAA
TCCCAGCCCGACCGGACATTATCAGGGCATCCACAACCGCACACCGCCACAGCAGGTTTTACGCTATCTGAGCCGGCTTT
CCGGGCCTTTCCTCGACCGGTTCGATTTGTCGATTGAAGTCCCGCTCCTGCCACCCGGTATTTTGAGTCAGCAAAATCAT
ACGCCTGCTTTGAGGGAAAGCAGCGCACACGTGCGGGAACGCGTGCTGATCGCCAGAGAAATTCAGTTAAAACGTGCGGG
AAAAATCAACGCTCATCTGAGCAGCAGCGAAGTGGAAACGTATTGTGTGTTAACCAAAGCAGACGCGGAGTTTCTGGAAG
AGGTACTGCATAAGCTGGGTTTATCGGTCAGAGCCTGGCATCGCATTCTGAAAGTCGCGAGAACGCTGGCTGATTTGGGT
GGTTTTGAGGCGATAGAACGACGGCATATTGCTGAGGCGCTGAGCTATCGGAGCATGGATAGGCTATTGTTAACTCTGCA
TAAGAGTCTGGCATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-497)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

63.107

100

0.636
  comM Glaesserella parasuis strain SC1401

63.209

100

0.632
  comM Vibrio cholerae strain A1552

62.795

99.413

0.624
  comM Vibrio campbellii strain DS40M4

62.253

99.022

0.616
  comM Legionella pneumophila str. Paris

48.096

97.652

0.47
  comM Legionella pneumophila strain ERS1305867

48.096

97.652

0.47
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.394

100

0.466