Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   QNH44_RS05560 Genome accession   NZ_CP126102
Coordinates   1044352..1045155 (+) Length   267 a.a.
NCBI ID   WP_048011769.1    Uniprot ID   -
Organism   Cytobacillus firmus strain LN5     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 1039352..1050155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH44_RS05530 (QNH44_05530) - 1040172..1040837 (-) 666 WP_163140274.1 VWA domain-containing protein -
  QNH44_RS05535 (QNH44_05535) - 1040913..1041974 (-) 1062 WP_048011766.1 M20/M25/M40 family metallo-hydrolase -
  QNH44_RS05540 (QNH44_05540) - 1042301..1042804 (+) 504 WP_048011779.1 DoxX family protein -
  QNH44_RS05545 (QNH44_05545) - 1042860..1043048 (-) 189 WP_048011767.1 YfhD family protein -
  QNH44_RS05550 (QNH44_05550) - 1043142..1043267 (-) 126 WP_082139046.1 YfhE family protein -
  QNH44_RS05555 (QNH44_05555) - 1043342..1044247 (-) 906 WP_048011768.1 TIGR01777 family oxidoreductase -
  QNH44_RS05560 (QNH44_05560) recX 1044352..1045155 (+) 804 WP_048011769.1 recombination regulator RecX Regulator
  QNH44_RS05565 (QNH44_05565) - 1045174..1045845 (-) 672 WP_048011770.1 SDR family oxidoreductase -
  QNH44_RS05570 (QNH44_05570) - 1046023..1046352 (+) 330 WP_227889006.1 YfhH family protein -
  QNH44_RS05575 (QNH44_05575) - 1046412..1046570 (-) 159 WP_009335831.1 YpzG family protein -
  QNH44_RS05580 (QNH44_05580) - 1046590..1046760 (-) 171 WP_048011772.1 small, acid-soluble spore protein K -
  QNH44_RS05585 (QNH44_05585) - 1046888..1047157 (+) 270 WP_048011773.1 YfhJ family protein -
  QNH44_RS05590 (QNH44_05590) - 1047191..1048171 (-) 981 WP_048011774.1 metal-dependent hydrolase -
  QNH44_RS05595 (QNH44_05595) mutY 1048377..1049471 (+) 1095 WP_283914146.1 A/G-specific adenine glycosylase -
  QNH44_RS05600 (QNH44_05600) - 1049511..1049735 (-) 225 WP_283914147.1 hypothetical protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 31623.07 Da        Isoelectric Point: 5.2371

>NTDB_id=835978 QNH44_RS05560 WP_048011769.1 1044352..1045155(+) (recX) [Cytobacillus firmus strain LN5]
MPTITKITVQKKNTDRYNIYMDYGKGEEYAFSVDEDVLIKHQLKKGMELDEFSLNEIGYQDDIRKAYNRAIHYLSRRMRS
ETEVRKHLAEKEVEEPVIQEVIHKLYDYHFLNDEEFAAAFVRTQMNTSDKGKGLIRTELKEKGISPQLIEMALEEYPRDA
EVAAAIRLCEKYSKKYARDSSKILKQKLEQMLMRKGFNFDIIQEAVTETEIDKEEDEELAALRFQAEKAKKKYANLPEFE
YMQKMKQALFRKGFSFELIEQFLSEEE

Nucleotide


Download         Length: 804 bp        

>NTDB_id=835978 QNH44_RS05560 WP_048011769.1 1044352..1045155(+) (recX) [Cytobacillus firmus strain LN5]
ATGCCGACTATTACGAAAATCACAGTTCAGAAAAAAAACACAGACCGCTACAATATATATATGGATTATGGGAAAGGTGA
AGAATATGCATTTAGTGTGGATGAAGATGTTTTAATTAAGCATCAGCTAAAAAAGGGAATGGAGCTTGATGAATTCTCTT
TAAATGAAATTGGCTATCAGGATGATATCCGGAAAGCCTATAACAGGGCTATTCATTATTTATCCAGAAGAATGCGCTCA
GAAACCGAAGTCCGCAAACATTTAGCTGAAAAAGAAGTGGAAGAACCGGTTATTCAGGAAGTTATCCACAAATTGTATGA
TTACCATTTTTTAAATGATGAAGAATTTGCAGCAGCTTTTGTGCGTACACAAATGAACACATCAGATAAAGGTAAAGGCC
TGATCCGCACAGAACTAAAGGAAAAAGGGATTTCCCCTCAATTAATCGAAATGGCATTGGAGGAATATCCAAGGGATGCT
GAAGTAGCTGCCGCTATAAGGCTGTGTGAAAAATATTCAAAGAAATATGCTCGTGATTCATCCAAAATCCTTAAGCAAAA
GCTGGAACAGATGTTAATGCGCAAAGGCTTTAATTTCGACATCATTCAAGAAGCTGTAACTGAAACGGAGATTGATAAAG
AAGAGGATGAAGAACTGGCTGCCCTGAGGTTCCAGGCGGAAAAAGCGAAGAAGAAATATGCAAACCTTCCTGAGTTCGAA
TATATGCAAAAAATGAAGCAAGCCTTGTTCAGAAAAGGTTTTTCTTTTGAATTGATAGAGCAATTTTTAAGTGAAGAAGA
ATAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(88-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

50.187

100

0.502