Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   QNH40_RS16970 Genome accession   NZ_CP126086
Coordinates   3253666..3254793 (-) Length   375 a.a.
NCBI ID   WP_008348271.1    Uniprot ID   -
Organism   Bacillus altitudinis strain CES-OCA-19     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3248666..3259793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH40_RS16935 (QNH40_16935) flgL 3248849..3249760 (-) 912 WP_108611024.1 flagellar hook-associated protein FlgL -
  QNH40_RS16940 (QNH40_16940) flgK 3249769..3251289 (-) 1521 WP_008348259.1 flagellar hook-associated protein FlgK -
  QNH40_RS16945 (QNH40_16945) - 3251305..3251787 (-) 483 WP_008348261.1 flagellar protein FlgN -
  QNH40_RS16950 (QNH40_16950) flgM 3251806..3252069 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  QNH40_RS16955 (QNH40_16955) - 3252149..3252568 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  QNH40_RS16960 (QNH40_16960) comFC 3252625..3253311 (-) 687 WP_026050153.1 amidophosphoribosyltransferase Machinery gene
  QNH40_RS16965 (QNH40_16965) - 3253308..3253601 (-) 294 WP_008348267.1 competence protein ComFB -
  QNH40_RS16970 (QNH40_16970) comFA 3253666..3254793 (-) 1128 WP_008348271.1 DEAD/DEAH box helicase Machinery gene
  QNH40_RS16975 (QNH40_16975) - 3255165..3256007 (-) 843 WP_007499966.1 DegV family protein -
  QNH40_RS16980 (QNH40_16980) degU 3256219..3256908 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  QNH40_RS16985 (QNH40_16985) degS 3256973..3258148 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  QNH40_RS16990 (QNH40_16990) - 3258370..3259038 (+) 669 WP_282900190.1 YigZ family protein -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 42921.91 Da        Isoelectric Point: 10.4871

>NTDB_id=835088 QNH40_RS16970 WP_008348271.1 3253666..3254793(-) (comFA) [Bacillus altitudinis strain CES-OCA-19]
MLGKVSECGFLYEWTGPQKKETRQVELTWQGELSKGQKRASDRLVEAIQNKFDLLVWAVCGAGKTEVLFHGIKYALNNGM
SVCIATPRTDVVLELEPRMRKAFQGLNIAALYGGSSQRFQMAPLMIATTHQLMRYKNAFDVLIVDEVDAFPYSMDERLQF
AVLKSMKKTGVRIYLSATPSKKMQKDVARRQLEAIKIPLRFHQKPLPVPTFQWVGDWKKRLKRNRLPASTMNWLHEHITK
KKRVLLFVPSISTMKKVTHILQGQDVNVQGVSADDQERKQKVQHFRDHRYDVLVTTTILERGVTIQDVQVGVLGAESPIF
TESALVQISGRAGRHPDFFNGDVYFFHFGLTRSMKQAKKHIVKMNNTAEKEFSEK

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=835088 QNH40_RS16970 WP_008348271.1 3253666..3254793(-) (comFA) [Bacillus altitudinis strain CES-OCA-19]
ATGCTGGGAAAAGTAAGCGAATGTGGCTTTCTCTACGAATGGACGGGTCCACAAAAGAAAGAAACAAGACAAGTTGAATT
AACATGGCAGGGAGAGCTTTCTAAAGGGCAAAAGAGAGCGTCCGATAGGCTAGTAGAAGCAATCCAAAACAAATTTGATC
TGCTCGTTTGGGCTGTTTGTGGTGCGGGGAAAACGGAGGTGCTTTTTCATGGAATAAAATATGCGTTAAATAACGGAATG
AGTGTTTGTATTGCGACGCCTAGAACCGATGTTGTACTTGAGCTTGAACCTCGAATGAGAAAGGCATTTCAAGGACTGAA
TATAGCTGCACTTTATGGCGGGAGTTCTCAAAGATTTCAAATGGCACCGCTTATGATCGCTACAACCCATCAGCTAATGA
GATATAAAAACGCCTTTGATGTCCTCATTGTAGACGAAGTCGATGCTTTTCCTTATTCAATGGATGAACGGCTTCAGTTT
GCTGTTTTAAAGTCAATGAAAAAAACAGGAGTTAGAATTTACTTAAGTGCCACACCATCTAAAAAAATGCAAAAAGATGT
TGCTCGTAGACAATTAGAAGCGATCAAAATTCCTCTGCGCTTCCACCAAAAACCGTTGCCTGTCCCAACATTTCAATGGG
TTGGAGATTGGAAAAAGAGATTAAAAAGAAATCGGCTTCCAGCATCTACAATGAACTGGCTGCATGAACATATCACAAAG
AAAAAAAGAGTGTTACTCTTTGTTCCTTCTATTTCTACTATGAAGAAGGTAACTCATATTCTTCAAGGTCAAGATGTAAA
TGTACAGGGTGTTTCTGCGGATGATCAAGAAAGGAAGCAAAAAGTCCAGCATTTCAGAGATCATAGATACGATGTATTGG
TTACAACAACTATTCTAGAAAGAGGCGTTACCATTCAAGATGTTCAAGTGGGCGTATTAGGTGCGGAATCTCCTATTTTT
ACAGAAAGTGCACTTGTTCAAATTTCTGGTAGAGCAGGGAGACATCCAGATTTTTTTAACGGAGACGTGTACTTTTTTCA
TTTTGGCTTAACGAGAAGTATGAAACAAGCAAAGAAACATATCGTAAAAATGAATAATACAGCTGAAAAAGAGTTTTCTG
AAAAATAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(32-180)

Helicase conserved C-terminal domain (Helicase_C)

(236-335)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

55.946

98.667

0.552
  comFA/cflA Streptococcus pneumoniae Rx1

41.243

94.4

0.389
  comFA/cflA Streptococcus pneumoniae D39

41.243

94.4

0.389
  comFA/cflA Streptococcus pneumoniae R6

41.243

94.4

0.389
  comFA/cflA Streptococcus pneumoniae TIGR4

40.96

94.4

0.387
  comFA/cflA Streptococcus mitis NCTC 12261

40.678

94.4

0.384
  comFA Latilactobacillus sakei subsp. sakei 23K

38.587

98.133

0.379
  comFA/cflA Streptococcus mitis SK321

39.548

94.4

0.373
  comFA Lactococcus lactis subsp. cremoris KW2

37.432

97.6

0.365