Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   Hhaem_RS03425 Genome accession   NZ_AP024093
Coordinates   689246..690775 (+) Length   509 a.a.
NCBI ID   WP_223894074.1    Uniprot ID   -
Organism   Haemophilus haemolyticus strain 2019-19     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 684246..695775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Hhaem_RS03405 (Hhaem_06470) aspA 684961..686379 (+) 1419 WP_223894070.1 aspartate ammonia-lyase -
  Hhaem_RS03410 (Hhaem_06480) tal 686467..687420 (-) 954 WP_005626807.1 transaldolase -
  Hhaem_RS03415 (Hhaem_06490) - 687544..688410 (-) 867 WP_223894072.1 VirK/YbjX family protein -
  Hhaem_RS03420 (Hhaem_06500) yihA 688514..689131 (+) 618 WP_223894073.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  Hhaem_RS03425 (Hhaem_06510) comM 689246..690775 (+) 1530 WP_223894074.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  Hhaem_RS03430 (Hhaem_06520) deoC 690809..691480 (-) 672 WP_223894075.1 deoxyribose-phosphate aldolase -
  Hhaem_RS03435 (Hhaem_06530) - 691590..692093 (+) 504 WP_223894076.1 protein disulfide oxidoreductase -
  Hhaem_RS03440 (Hhaem_06540) rfaD 692146..693072 (+) 927 WP_223894077.1 ADP-glyceromanno-heptose 6-epimerase -
  Hhaem_RS03445 (Hhaem_06550) waaF 693158..694198 (+) 1041 WP_223894078.1 lipopolysaccharide heptosyltransferase II -
  Hhaem_RS03450 (Hhaem_06560) - 694216..694800 (+) 585 WP_223894079.1 YcxB family protein -
  Hhaem_RS03455 (Hhaem_06570) - 694829..695734 (+) 906 WP_223894081.1 DMT family transporter -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55882.39 Da        Isoelectric Point: 9.7771

>NTDB_id=83435 Hhaem_RS03425 WP_223894074.1 689246..690775(+) (comM) [Haemophilus haemolyticus strain 2019-19]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALMNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGILAASDQLDASRLKQFEFVAELALTGQLRGVHGVIPAILAAQKSKRELIIAKQNANEASLVSDQNTYFAQTL
LDVVQFLNGQEKLPLATEIMKESAVSFLGKNTLDLTDIIGQQHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTGLLP
EMTDLEAIETASVTSLVQNELNFHNWKQRPFRAPHHSASMPALVGGGTIPKPGEISLATNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLVAAMNPSPTGHYSGTHNRTSPQQIMRYLNRLSGPFLDRFDLSIEVPLLPQGSLQN
TGDRGETSSQVREKVLKVREIQMERAGKINAYLNSKEIERDCKLSDKDAFFLENALNKLGLSVRAYHRILKVSRTIADLQ
GEQQISQPHLAEALGYRAMDRLLQKLSNM

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=83435 Hhaem_RS03425 WP_223894074.1 689246..690775(+) (comM) [Haemophilus haemolyticus strain 2019-19]
ATGTCCCTTGCTATTGTTTACAGTCGTGCCTCTATGGGGGTGCAAGCACCGCTTGTCACTATTGAGGTACATTTAAGCAA
CGGAAAACCCGGATTTACGCTTGTTGGTTTGCCAGAAAAAACGGTGAAAGAGGCACAAGATCGGGTGCGTAGTGCGTTGA
TGAATGCACAATTTAAATACCCAGCCAAACGCATTACCGTGAATCTCGCACCTGCAGATTTACCGAAAGAAGGCGGACGA
TTTGATTTGCCTATTGCCATCGGGATTTTAGCCGCATCGGATCAGCTTGATGCGAGCCGTTTAAAGCAATTTGAATTTGT
GGCGGAGCTTGCACTTACGGGCCAATTGCGTGGTGTACATGGTGTAATCCCCGCTATTCTTGCAGCGCAAAAGTCAAAGC
GAGAGTTAATTATCGCGAAACAAAATGCCAATGAAGCCTCGCTCGTGTCTGATCAAAATACTTATTTTGCGCAAACGCTT
TTAGATGTGGTGCAATTTCTCAATGGTCAGGAAAAATTACCACTCGCCACTGAAATTATGAAAGAAAGTGCGGTAAGTTT
TTTGGGTAAAAATACATTAGATTTAACAGATATTATTGGACAACAGCATGCCAAACGAGCATTGACCATTGCCGCAGCGG
GGCAGCATAATTTGCTCTTTCTTGGCCCACCGGGTACAGGAAAAACAATGTTAGCTAGTCGATTAACAGGACTTTTACCT
GAAATGACCGATCTAGAAGCGATAGAAACGGCATCTGTAACGAGTTTAGTTCAAAATGAGTTAAATTTTCATAATTGGAA
ACAACGTCCTTTTCGAGCCCCGCACCATAGTGCATCAATGCCGGCTTTAGTTGGAGGAGGGACGATCCCAAAACCTGGTG
AAATATCCTTAGCAACAAATGGAGTACTTTTTCTTGATGAACTTCCAGAATTTGAGCGAAAGGTGTTAGATGCACTACGT
CAGCCTTTAGAAAGTGGTGAGATTATTATTTCTCGTGCTAATGCCAAAATCCAATTTCCAGCTCGTTTTCAATTAGTGGC
AGCGATGAATCCAAGCCCGACAGGCCATTATTCTGGGACACATAACCGCACTTCACCCCAGCAAATTATGCGTTATTTGA
ATCGACTTTCAGGGCCCTTTTTAGATCGTTTTGATTTATCTATTGAAGTGCCTTTACTGCCACAAGGTAGCTTACAAAAT
ACGGGCGATCGTGGTGAAACCAGTTCGCAAGTACGTGAAAAAGTGTTAAAAGTGCGTGAGATTCAAATGGAAAGAGCGGG
AAAAATTAACGCTTATTTGAATAGTAAAGAGATTGAGCGTGATTGCAAGTTAAGTGATAAAGATGCCTTTTTCCTTGAAA
ATGCGCTGAATAAACTGGGGCTTTCTGTAAGGGCTTACCATCGTATTTTGAAAGTTTCTCGAACCATTGCCGATCTACAA
GGAGAACAACAAATTTCTCAACCGCACTTGGCGGAGGCCTTGGGCTATCGAGCAATGGATCGTTTGTTGCAGAAATTGTC
GAATATGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

98.035

100

0.98
  comM Glaesserella parasuis strain SC1401

78.474

100

0.788
  comM Vibrio cholerae strain A1552

67.456

99.607

0.672
  comM Vibrio campbellii strain DS40M4

66.075

99.607

0.658
  comM Legionella pneumophila str. Paris

51.292

98.821

0.507
  comM Legionella pneumophila strain ERS1305867

51.292

98.821

0.507
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.082

100

0.475

Multiple sequence alignment