Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   QIH85_RS06495 Genome accession   NZ_CP126010
Coordinates   1404068..1404211 (+) Length   47 a.a.
NCBI ID   WP_158332945.1    Uniprot ID   -
Organism   Bradyrhizobium japonicum strain N03G-Bj     
Function   transport of ComC (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1404325..1405389 1404068..1404211 flank 114


Gene organization within MGE regions


Location: 1404068..1405389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QIH85_RS06495 (QIH85_06495) comA/nlmT 1404068..1404211 (+) 144 WP_158332945.1 hypothetical protein Regulator
  QIH85_RS06500 (QIH85_06500) - 1404325..1405389 (-) 1065 WP_026192128.1 IS630-like element ISRj1 family transposase -

Sequence

Protein


Download         Length: 47 a.a.        Molecular weight: 5152.00 Da        Isoelectric Point: 7.1631

>NTDB_id=834326 QIH85_RS06495 WP_158332945.1 1404068..1404211(+) (comA/nlmT) [Bradyrhizobium japonicum strain N03G-Bj]
MIAHRPATVLSCDRILVMDQGKIVEQGTHAELVAKNGLYARLQFEGA

Nucleotide


Download         Length: 144 bp        

>NTDB_id=834326 QIH85_RS06495 WP_158332945.1 1404068..1404211(+) (comA/nlmT) [Bradyrhizobium japonicum strain N03G-Bj]
GTGATCGCGCACCGGCCCGCCACCGTGCTGTCCTGCGACCGCATCCTGGTGATGGACCAGGGCAAGATCGTCGAGCAGGG
CACGCACGCCGAGCTCGTCGCCAAGAACGGGCTCTATGCGAGGCTGCAGTTCGAGGGCGCGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

58.537

87.234

0.511
  rcrQ Streptococcus mutans UA159

54.762

89.362

0.489
  comA Streptococcus pneumoniae TIGR4

51.22

87.234

0.447
  comA Streptococcus pneumoniae Rx1

51.22

87.234

0.447
  comA Streptococcus mitis NCTC 12261

51.22

87.234

0.447
  comA Streptococcus pneumoniae D39

51.22

87.234

0.447
  comA Streptococcus pneumoniae R6

51.22

87.234

0.447
  rcrP Streptococcus mutans UA159

47.727

93.617

0.447
  comA Streptococcus mitis SK321

48.78

87.234

0.426
  comA Streptococcus gordonii str. Challis substr. CH1

43.902

87.234

0.383