Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   Hhaem_RS01385 Genome accession   NZ_AP024093
Coordinates   279793..280590 (-) Length   265 a.a.
NCBI ID   WP_223893825.1    Uniprot ID   -
Organism   Haemophilus haemolyticus strain 2019-19     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 274793..285590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Hhaem_RS01355 (Hhaem_02710) nfuA 275640..276236 (-) 597 WP_223893820.1 Fe-S biogenesis protein NfuA -
  Hhaem_RS01360 (Hhaem_02720) - 276312..276998 (-) 687 WP_223894288.1 ComF family protein -
  Hhaem_RS01365 (Hhaem_02730) comE 277011..278348 (-) 1338 WP_223893822.1 type IV pilus secretin PilQ family protein Machinery gene
  Hhaem_RS01370 (Hhaem_02740) comD 278358..278771 (-) 414 WP_223893823.1 pilus assembly protein PilP Machinery gene
  Hhaem_RS01375 (Hhaem_02750) comC 278768..279289 (-) 522 WP_118845892.1 competence protein ComC Machinery gene
  Hhaem_RS01380 (Hhaem_02760) comB 279286..279792 (-) 507 WP_223893824.1 competence protein B Machinery gene
  Hhaem_RS01385 (Hhaem_02770) comA 279793..280590 (-) 798 WP_223893825.1 competence protein ComA Machinery gene
  Hhaem_RS01390 (Hhaem_02780) - 280689..283292 (+) 2604 WP_223893826.1 penicillin-binding protein 1A -
  Hhaem_RS01395 (Hhaem_02790) - 283365..284210 (+) 846 WP_223893827.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  Hhaem_RS01400 (Hhaem_02800) - 284379..284708 (+) 330 WP_223894289.1 YbaB/EbfC family nucleoid-associated protein -
  Hhaem_RS01405 (Hhaem_02810) - 284737..284961 (+) 225 WP_032828003.1 hypothetical protein -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 31314.60 Da        Isoelectric Point: 5.8443

>NTDB_id=83426 Hhaem_RS01385 WP_223893825.1 279793..280590(-) (comA) [Haemophilus haemolyticus strain 2019-19]
MQFSRKNHRTLQIGIHCKQGNFDFVWFDELEQPQCYQASINDSDLKNRFLRHLKTQSQGKTFSLRFVASISAHLTWSKVL
MLPQILNAQECHQQCKFVIEKELPIPLEELWFDYVSTPLKQGFRLEITAIREASAQTYLQDFQPFKINTLDVVPYSILRA
FQYLLNEQVRSENTLFLFQEDDYCLAICERSQQSQILQSHENLTVLYEQFTERFEGQLEQVFVYQIPSSHTPLPENWQRV
ETDLPFIALGNALWQKDLHQQKMGN

Nucleotide


Download         Length: 798 bp        

>NTDB_id=83426 Hhaem_RS01385 WP_223893825.1 279793..280590(-) (comA) [Haemophilus haemolyticus strain 2019-19]
ATGCAATTCTCTCGGAAAAATCACCGCACTTTACAAATTGGTATTCACTGTAAACAAGGTAATTTTGATTTTGTGTGGTT
TGATGAACTTGAACAGCCACAATGTTATCAAGCCTCTATCAATGATAGTGATTTAAAAAATCGTTTTTTGCGACATTTAA
AAACACAATCTCAAGGGAAAACCTTTTCTTTGCGGTTTGTGGCAAGTATTTCTGCTCACTTGACTTGGTCGAAAGTATTA
ATGTTACCGCAAATATTAAATGCGCAAGAATGTCATCAACAATGTAAATTTGTGATTGAGAAAGAGTTGCCCATTCCTTT
AGAGGAATTGTGGTTTGATTATGTTTCTACTCCGTTAAAGCAAGGTTTTCGTTTAGAGATTACGGCAATTCGAGAAGCAA
GTGCGCAAACTTATTTGCAAGATTTTCAGCCATTTAAAATTAATACGTTAGATGTTGTTCCTTATAGCATCTTGCGTGCA
TTTCAATATTTGTTGAATGAGCAAGTGCGGTCAGAAAATACCTTATTTTTATTTCAAGAAGATGACTATTGTTTAGCGAT
TTGTGAAAGATCTCAGCAATCGCAAATTTTACAATCTCATGAAAATCTTACTGTACTTTATGAGCAATTTACGGAACGTT
TTGAAGGGCAACTTGAACAAGTTTTTGTGTATCAAATTCCCTCAAGTCATACGCCATTACCAGAAAATTGGCAGCGAGTA
GAAACGGATTTACCCTTTATTGCGCTTGGTAACGCACTATGGCAAAAAGATTTACATCAACAAAAAATGGGTAACTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae 86-028NP

86.415

100

0.864
  comA Haemophilus influenzae Rd KW20

86.415

100

0.864

Multiple sequence alignment