Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | Hhaem_RS01370 | Genome accession | NZ_AP024093 |
| Coordinates | 278358..278771 (-) | Length | 137 a.a. |
| NCBI ID | WP_223893823.1 | Uniprot ID | - |
| Organism | Haemophilus haemolyticus strain 2019-19 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 273358..283771
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Hhaem_RS01340 (Hhaem_02680) | - | 273742..274014 (-) | 273 | WP_005634530.1 | HU family DNA-binding protein | - |
| Hhaem_RS01345 (Hhaem_02690) | - | 274152..274742 (-) | 591 | WP_105893546.1 | YjaG family protein | - |
| Hhaem_RS01350 (Hhaem_02700) | nudC | 274778..275572 (-) | 795 | WP_223893819.1 | NAD(+) diphosphatase | - |
| Hhaem_RS01355 (Hhaem_02710) | nfuA | 275640..276236 (-) | 597 | WP_223893820.1 | Fe-S biogenesis protein NfuA | - |
| Hhaem_RS01360 (Hhaem_02720) | - | 276312..276998 (-) | 687 | WP_223894288.1 | ComF family protein | - |
| Hhaem_RS01365 (Hhaem_02730) | comE | 277011..278348 (-) | 1338 | WP_223893822.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| Hhaem_RS01370 (Hhaem_02740) | comD | 278358..278771 (-) | 414 | WP_223893823.1 | pilus assembly protein PilP | Machinery gene |
| Hhaem_RS01375 (Hhaem_02750) | comC | 278768..279289 (-) | 522 | WP_118845892.1 | competence protein ComC | Machinery gene |
| Hhaem_RS01380 (Hhaem_02760) | comB | 279286..279792 (-) | 507 | WP_223893824.1 | competence protein B | Machinery gene |
| Hhaem_RS01385 (Hhaem_02770) | comA | 279793..280590 (-) | 798 | WP_223893825.1 | competence protein ComA | Machinery gene |
| Hhaem_RS01390 (Hhaem_02780) | - | 280689..283292 (+) | 2604 | WP_223893826.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15602.72 Da Isoelectric Point: 4.6172
>NTDB_id=83423 Hhaem_RS01370 WP_223893823.1 278358..278771(-) (comD) [Haemophilus haemolyticus strain 2019-19]
MKYWFFLVALFFMNCSWGQDPFDKTQRNGSKFDNAQTVMEQTEITSLDVPNNQCGADENRQAAEIPLSALKLVGVVISKD
KTFALLLDQDLQIYSVLEGGDVAKEGYLVEKIHQNKVQFMRKLGEQCDSTEHKELSF
MKYWFFLVALFFMNCSWGQDPFDKTQRNGSKFDNAQTVMEQTEITSLDVPNNQCGADENRQAAEIPLSALKLVGVVISKD
KTFALLLDQDLQIYSVLEGGDVAKEGYLVEKIHQNKVQFMRKLGEQCDSTEHKELSF
Nucleotide
Download Length: 414 bp
>NTDB_id=83423 Hhaem_RS01370 WP_223893823.1 278358..278771(-) (comD) [Haemophilus haemolyticus strain 2019-19]
ATGAAGTATTGGTTTTTCCTAGTTGCATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACGGTTCTAAGTTTGATAACGCACAAACAGTAATGGAGCAGACAGAAATAACCTCCTTAGATGTACCTAATAATCAAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAGCGCTTTAAAATTGGTGGGGGTAGTAATTTCTAAAGAT
AAAACGTTTGCGTTATTGCTAGATCAGGATTTGCAAATTTACAGCGTTTTAGAGGGGGGGGATGTGGCTAAAGAGGGCTA
TCTAGTGGAAAAAATTCATCAAAATAAAGTGCAATTTATGCGTAAGCTCGGTGAGCAATGTGATAGCACTGAACATAAAG
AATTAAGTTTTTAA
ATGAAGTATTGGTTTTTCCTAGTTGCATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACGGTTCTAAGTTTGATAACGCACAAACAGTAATGGAGCAGACAGAAATAACCTCCTTAGATGTACCTAATAATCAAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAGCGCTTTAAAATTGGTGGGGGTAGTAATTTCTAAAGAT
AAAACGTTTGCGTTATTGCTAGATCAGGATTTGCAAATTTACAGCGTTTTAGAGGGGGGGGATGTGGCTAAAGAGGGCTA
TCTAGTGGAAAAAATTCATCAAAATAAAGTGCAATTTATGCGTAAGCTCGGTGAGCAATGTGATAGCACTGAACATAAAG
AATTAAGTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae 86-028NP |
85.401 |
100 |
0.854 |
| comD | Haemophilus influenzae Rd KW20 |
84.672 |
100 |
0.847 |