Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | VNTUMSATTG_RS16035 | Genome accession | NZ_AP024087 |
| Coordinates | 3511698..3512567 (+) | Length | 289 a.a. |
| NCBI ID | WP_200766163.1 | Uniprot ID | - |
| Organism | Vibrio nigripulchritudo strain TUMSAT-TG-2018 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3506698..3517567
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VNTUMSATTG_RS16015 (VNTUMSATTG_31360) | nadC | 3507128..3508015 (+) | 888 | WP_200766159.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| VNTUMSATTG_RS16020 (VNTUMSATTG_31370) | pilA | 3508293..3508727 (+) | 435 | WP_225911751.1 | pilin | Machinery gene |
| VNTUMSATTG_RS16025 (VNTUMSATTG_31380) | pilB | 3508727..3510415 (+) | 1689 | WP_200766161.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| VNTUMSATTG_RS16030 (VNTUMSATTG_31390) | pilC | 3510425..3511657 (+) | 1233 | WP_200766162.1 | type II secretion system F family protein | Machinery gene |
| VNTUMSATTG_RS16035 (VNTUMSATTG_31400) | pilD | 3511698..3512567 (+) | 870 | WP_200766163.1 | A24 family peptidase | Machinery gene |
| VNTUMSATTG_RS16040 (VNTUMSATTG_31410) | coaE | 3512617..3513222 (+) | 606 | WP_200766164.1 | dephospho-CoA kinase | - |
| VNTUMSATTG_RS16045 (VNTUMSATTG_31420) | zapD | 3513256..3513996 (+) | 741 | WP_022599627.1 | cell division protein ZapD | - |
| VNTUMSATTG_RS16050 (VNTUMSATTG_31430) | yacG | 3514053..3514247 (+) | 195 | WP_004408892.1 | DNA gyrase inhibitor YacG | - |
| VNTUMSATTG_RS16055 (VNTUMSATTG_31440) | mutT | 3514334..3514735 (-) | 402 | WP_004408891.1 | 8-oxo-dGTP diphosphatase MutT | - |
| VNTUMSATTG_RS16060 (VNTUMSATTG_31450) | rplS | 3514927..3515280 (-) | 354 | WP_004408890.1 | 50S ribosomal protein L19 | - |
| VNTUMSATTG_RS16065 (VNTUMSATTG_31460) | trmD | 3515322..3516065 (-) | 744 | WP_200766165.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| VNTUMSATTG_RS16070 (VNTUMSATTG_31470) | rimM | 3516093..3516647 (-) | 555 | WP_022599632.1 | ribosome maturation factor RimM | - |
| VNTUMSATTG_RS16075 (VNTUMSATTG_31480) | rpsP | 3516674..3516922 (-) | 249 | WP_004408887.1 | 30S ribosomal protein S16 | - |
Sequence
Protein
Download Length: 289 a.a. Molecular weight: 32611.81 Da Isoelectric Point: 6.6865
>NTDB_id=83390 VNTUMSATTG_RS16035 WP_200766163.1 3511698..3512567(+) (pilD) [Vibrio nigripulchritudo strain TUMSAT-TG-2018]
MEVFHYYPWLFPVMAAIFGLVIGSFLNVVIYRLPKMMENEWRQECAESFPEYKIEPPKEKLTLSVPRSSCQSCKTPIRIR
DNIPVLSWLLLKGKCHACDDTIKVRYPLIELLTAGLSFAVAWQFGFSYFSVALLFFTFVLIAATFIDLDTLLLPDQLTLP
LMWAGIALSLFEISPISLTDAIIGAMVGYLCLWSVYQLFKLATGKEGMGYGDFKLLAALGAWLGWQSLPIIILMSSLVGV
VFGVIQLRLQKKGIEQAFPFGPYLAIAGWITLMFGQDITNWYFSHFLGI
MEVFHYYPWLFPVMAAIFGLVIGSFLNVVIYRLPKMMENEWRQECAESFPEYKIEPPKEKLTLSVPRSSCQSCKTPIRIR
DNIPVLSWLLLKGKCHACDDTIKVRYPLIELLTAGLSFAVAWQFGFSYFSVALLFFTFVLIAATFIDLDTLLLPDQLTLP
LMWAGIALSLFEISPISLTDAIIGAMVGYLCLWSVYQLFKLATGKEGMGYGDFKLLAALGAWLGWQSLPIIILMSSLVGV
VFGVIQLRLQKKGIEQAFPFGPYLAIAGWITLMFGQDITNWYFSHFLGI
Nucleotide
Download Length: 870 bp
>NTDB_id=83390 VNTUMSATTG_RS16035 WP_200766163.1 3511698..3512567(+) (pilD) [Vibrio nigripulchritudo strain TUMSAT-TG-2018]
ATGGAAGTTTTTCACTACTACCCATGGTTATTCCCTGTGATGGCCGCAATCTTTGGATTGGTCATTGGCAGTTTCTTAAA
TGTAGTGATCTATCGGTTGCCTAAAATGATGGAAAACGAATGGAGACAGGAGTGCGCAGAATCGTTTCCTGAGTACAAGA
TTGAACCTCCAAAGGAAAAGCTGACACTTAGCGTTCCGCGTTCAAGTTGCCAAAGTTGTAAAACGCCAATTCGTATTCGA
GATAACATCCCTGTATTGAGTTGGCTGCTTTTAAAAGGGAAATGCCATGCATGCGACGATACCATCAAGGTTCGATACCC
TTTAATAGAGTTACTCACGGCAGGGCTAAGCTTCGCGGTAGCCTGGCAATTTGGATTTAGTTACTTTTCTGTTGCTCTGC
TCTTTTTCACCTTCGTACTGATTGCTGCCACGTTTATTGACCTTGATACACTACTGTTACCCGATCAACTGACTCTACCT
TTGATGTGGGCAGGCATTGCGTTATCTCTTTTTGAAATTAGCCCAATCTCTCTTACCGACGCCATCATTGGCGCCATGGT
GGGCTATCTCTGCTTATGGAGTGTCTACCAGTTGTTTAAGCTCGCAACAGGCAAAGAAGGGATGGGTTATGGCGACTTTA
AATTGCTGGCTGCGCTCGGAGCATGGTTAGGCTGGCAAAGCCTCCCTATTATCATCCTGATGTCCTCTCTGGTTGGCGTA
GTCTTTGGCGTTATTCAGCTCCGTCTGCAGAAGAAAGGCATCGAACAAGCCTTTCCTTTTGGTCCTTACCTTGCGATTGC
TGGGTGGATTACTCTGATGTTTGGACAAGACATCACTAACTGGTATTTCTCACATTTTCTTGGCATTTAA
ATGGAAGTTTTTCACTACTACCCATGGTTATTCCCTGTGATGGCCGCAATCTTTGGATTGGTCATTGGCAGTTTCTTAAA
TGTAGTGATCTATCGGTTGCCTAAAATGATGGAAAACGAATGGAGACAGGAGTGCGCAGAATCGTTTCCTGAGTACAAGA
TTGAACCTCCAAAGGAAAAGCTGACACTTAGCGTTCCGCGTTCAAGTTGCCAAAGTTGTAAAACGCCAATTCGTATTCGA
GATAACATCCCTGTATTGAGTTGGCTGCTTTTAAAAGGGAAATGCCATGCATGCGACGATACCATCAAGGTTCGATACCC
TTTAATAGAGTTACTCACGGCAGGGCTAAGCTTCGCGGTAGCCTGGCAATTTGGATTTAGTTACTTTTCTGTTGCTCTGC
TCTTTTTCACCTTCGTACTGATTGCTGCCACGTTTATTGACCTTGATACACTACTGTTACCCGATCAACTGACTCTACCT
TTGATGTGGGCAGGCATTGCGTTATCTCTTTTTGAAATTAGCCCAATCTCTCTTACCGACGCCATCATTGGCGCCATGGT
GGGCTATCTCTGCTTATGGAGTGTCTACCAGTTGTTTAAGCTCGCAACAGGCAAAGAAGGGATGGGTTATGGCGACTTTA
AATTGCTGGCTGCGCTCGGAGCATGGTTAGGCTGGCAAAGCCTCCCTATTATCATCCTGATGTCCTCTCTGGTTGGCGTA
GTCTTTGGCGTTATTCAGCTCCGTCTGCAGAAGAAAGGCATCGAACAAGCCTTTCCTTTTGGTCCTTACCTTGCGATTGC
TGGGTGGATTACTCTGATGTTTGGACAAGACATCACTAACTGGTATTTCTCACATTTTCTTGGCATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio campbellii strain DS40M4 |
79.585 |
100 |
0.796 |
| pilD | Vibrio cholerae strain A1552 |
70.486 |
99.654 |
0.702 |
| pilD | Acinetobacter baumannii D1279779 |
52.574 |
94.118 |
0.495 |
| pilD | Acinetobacter nosocomialis M2 |
52.574 |
94.118 |
0.495 |
| pilD | Neisseria gonorrhoeae MS11 |
45.818 |
95.156 |
0.436 |