Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   VNTUMSATTG_RS16030 Genome accession   NZ_AP024087
Coordinates   3510425..3511657 (+) Length   410 a.a.
NCBI ID   WP_200766162.1    Uniprot ID   -
Organism   Vibrio nigripulchritudo strain TUMSAT-TG-2018     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3505425..3516657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNTUMSATTG_RS16010 (VNTUMSATTG_31350) ampD 3506442..3506999 (-) 558 WP_200767481.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  VNTUMSATTG_RS16015 (VNTUMSATTG_31360) nadC 3507128..3508015 (+) 888 WP_200766159.1 carboxylating nicotinate-nucleotide diphosphorylase -
  VNTUMSATTG_RS16020 (VNTUMSATTG_31370) pilA 3508293..3508727 (+) 435 WP_225911751.1 pilin Machinery gene
  VNTUMSATTG_RS16025 (VNTUMSATTG_31380) pilB 3508727..3510415 (+) 1689 WP_200766161.1 type IV-A pilus assembly ATPase PilB Machinery gene
  VNTUMSATTG_RS16030 (VNTUMSATTG_31390) pilC 3510425..3511657 (+) 1233 WP_200766162.1 type II secretion system F family protein Machinery gene
  VNTUMSATTG_RS16035 (VNTUMSATTG_31400) pilD 3511698..3512567 (+) 870 WP_200766163.1 A24 family peptidase Machinery gene
  VNTUMSATTG_RS16040 (VNTUMSATTG_31410) coaE 3512617..3513222 (+) 606 WP_200766164.1 dephospho-CoA kinase -
  VNTUMSATTG_RS16045 (VNTUMSATTG_31420) zapD 3513256..3513996 (+) 741 WP_022599627.1 cell division protein ZapD -
  VNTUMSATTG_RS16050 (VNTUMSATTG_31430) yacG 3514053..3514247 (+) 195 WP_004408892.1 DNA gyrase inhibitor YacG -
  VNTUMSATTG_RS16055 (VNTUMSATTG_31440) mutT 3514334..3514735 (-) 402 WP_004408891.1 8-oxo-dGTP diphosphatase MutT -
  VNTUMSATTG_RS16060 (VNTUMSATTG_31450) rplS 3514927..3515280 (-) 354 WP_004408890.1 50S ribosomal protein L19 -
  VNTUMSATTG_RS16065 (VNTUMSATTG_31460) trmD 3515322..3516065 (-) 744 WP_200766165.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  VNTUMSATTG_RS16070 (VNTUMSATTG_31470) rimM 3516093..3516647 (-) 555 WP_022599632.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45680.69 Da        Isoelectric Point: 10.3308

>NTDB_id=83389 VNTUMSATTG_RS16030 WP_200766162.1 3510425..3511657(+) (pilC) [Vibrio nigripulchritudo strain TUMSAT-TG-2018]
MEQSSSPKLKLHNFKWKGINSSGKKASGQFLAFTEIEVRDKLRTQQIQIKKVRKSGISVLDKLSHKVNKRDIMVFTRQMA
TMMGTGVPIVQSLKMVSDNHNKAEMKSILSQVTKAVEAGTPISKALSTSSSHFDGFYTDLIETGEQTGNLSEVFDRIATY
QEKSEQLRSKVIKAMIYPVMVILTAIGVSFLMLQFVIPEFEKMFSGFGAELPWFTQQVLKLSHIVQNDAWKMALALIVFT
VGFKLLRKRSFKFRLRSSRWGLKFPIVGGVFSKAAIAKFSRTLATSFNAGIPILNGLKTSAKTASNLHYQVAIEQVYKDT
AAGMPIYIAMRNTEAFPEMVLQMVMIGEESGSLDDMLNKVANVYEFEVDNTVDNLGKLLEPLIIIFLGVVIGGLVVSMYL
PVFNLMSVLG

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=83389 VNTUMSATTG_RS16030 WP_200766162.1 3510425..3511657(+) (pilC) [Vibrio nigripulchritudo strain TUMSAT-TG-2018]
TTGGAACAGTCATCCTCCCCAAAGCTCAAGCTGCACAACTTTAAATGGAAGGGTATCAATAGCTCTGGCAAGAAAGCATC
AGGGCAGTTTTTGGCTTTTACCGAAATAGAGGTAAGAGACAAACTTCGCACTCAGCAAATTCAGATTAAGAAAGTCAGAA
AATCTGGTATTTCAGTGCTTGATAAGCTCAGCCACAAAGTGAACAAAAGAGACATAATGGTTTTCACCAGACAAATGGCG
ACCATGATGGGGACTGGTGTGCCTATTGTTCAGTCGTTGAAAATGGTGTCAGACAATCATAACAAAGCGGAAATGAAATC
CATTTTGTCTCAAGTAACCAAAGCGGTAGAAGCTGGTACGCCAATTTCTAAGGCATTAAGTACATCAAGCAGTCATTTCG
ATGGCTTCTATACTGACCTAATAGAGACGGGAGAGCAGACGGGTAACCTTTCGGAAGTCTTTGACCGTATTGCCACCTAT
CAGGAAAAAAGTGAACAGCTAAGATCCAAAGTCATCAAAGCCATGATTTACCCTGTAATGGTTATTTTGACAGCCATTGG
GGTTTCATTCTTAATGCTTCAATTTGTTATTCCTGAATTTGAAAAAATGTTTTCAGGGTTTGGAGCAGAATTGCCTTGGT
TTACGCAACAAGTCCTCAAGCTCTCTCACATTGTCCAAAACGATGCCTGGAAGATGGCATTGGCGCTGATCGTTTTTACC
GTTGGTTTTAAACTATTGAGAAAGCGTTCTTTTAAGTTCCGATTGAGGAGCTCTCGCTGGGGACTAAAATTTCCAATTGT
GGGGGGCGTATTTAGTAAGGCAGCCATCGCCAAATTTAGCCGGACACTGGCCACCAGTTTTAACGCAGGCATTCCTATAT
TAAATGGTTTAAAAACCAGTGCCAAAACAGCGAGTAATCTGCATTATCAAGTTGCCATTGAACAGGTTTATAAAGACACC
GCAGCGGGTATGCCCATATACATTGCCATGCGAAACACTGAAGCTTTCCCGGAAATGGTATTGCAAATGGTGATGATTGG
AGAAGAGTCCGGTTCGCTCGATGACATGCTCAATAAAGTCGCCAACGTCTATGAGTTTGAGGTTGACAACACAGTCGATA
ACCTTGGGAAGTTGCTTGAGCCTTTGATTATCATTTTCCTTGGGGTCGTCATTGGTGGTCTTGTCGTTTCTATGTACTTA
CCAGTATTTAACTTAATGAGTGTATTAGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-401)

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

70.69

99.024

0.7
  pilC Vibrio campbellii strain DS40M4

68.148

98.78

0.673
  pilG Neisseria gonorrhoeae MS11

41.481

98.78

0.41
  pilG Neisseria meningitidis 44/76-A

41.235

98.78

0.407
  pilC Acinetobacter baylyi ADP1

41.814

96.829

0.405
  pilC Pseudomonas stutzeri DSM 10701

41.814

96.829

0.405
  pilC Acinetobacter baumannii D1279779

41.5

97.561

0.405
  pilC Legionella pneumophila strain ERS1305867

38.835

100

0.39

Multiple sequence alignment