Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QNH97_RS01765 Genome accession   NZ_CP125957
Coordinates   391187..392251 (+) Length   354 a.a.
NCBI ID   WP_283555320.1    Uniprot ID   -
Organism   Pseudomonas sp. G2-4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 386187..397251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH97_RS01755 (QNH97_01755) - 387017..388285 (+) 1269 WP_053117649.1 malic enzyme-like NAD(P)-binding protein -
  QNH97_RS01760 (QNH97_01760) - 388534..390978 (-) 2445 WP_283557587.1 penicillin-binding protein 1A -
  QNH97_RS01765 (QNH97_01765) comM 391187..392251 (+) 1065 WP_283555320.1 pilus assembly protein PilM Machinery gene
  QNH97_RS01770 (QNH97_01770) - 392251..392817 (+) 567 WP_283555321.1 PilN domain-containing protein -
  QNH97_RS01775 (QNH97_01775) pilO 392814..393437 (+) 624 WP_283555322.1 type 4a pilus biogenesis protein PilO -
  QNH97_RS01780 (QNH97_01780) - 393434..393979 (+) 546 WP_283555323.1 pilus assembly protein PilP -
  QNH97_RS01785 (QNH97_01785) pilQ 393976..396057 (+) 2082 WP_283555324.1 type IV pilus secretin PilQ Machinery gene
  QNH97_RS01790 (QNH97_01790) aroK 396062..396580 (+) 519 WP_024779904.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38184.66 Da        Isoelectric Point: 4.9070

>NTDB_id=833651 QNH97_RS01765 WP_283555320.1 391187..392251(+) (comM) [Pseudomonas sp. G2-4]
MLRLFNKKAHTLLGIDISSTSVKLLELSRQGDRYRVESYAVEPLPANAVIEKNIAELEGVGQALSRVLAKAKTPTRNVAV
AVAGSAVITKTIEMDAGLSDDDMENQLKIEADQYIPYPLDEVAIDFEVLGVSPRSAERVEVLLAACRKENVEVREAALAL
AGLTARVVDVEAYALERAFGLLATQLAASQERLTVAVIDIGATMTTLSVLHNGRIIYTREQLFGGRQLTEEIQRRYGLTP
EQAGQAKKQGGLPDDYLSEVLQPFREALVQQVSRSLQFFFASGQYSAVDHILLAGGSASVAGLDRLIEQRLGTPTQVANP
FTNMSLSNKVNAGALASDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=833651 QNH97_RS01765 WP_283555320.1 391187..392251(+) (comM) [Pseudomonas sp. G2-4]
GTGCTACGACTCTTCAATAAAAAAGCCCATACGCTTCTGGGGATAGACATCAGCTCCACATCGGTGAAGCTGCTTGAGTT
GAGCCGCCAGGGGGACCGGTACCGCGTCGAGTCCTACGCGGTCGAACCGTTGCCGGCCAATGCAGTGATCGAAAAAAACA
TCGCCGAGCTCGAAGGGGTGGGCCAGGCATTGTCTCGGGTGCTGGCCAAGGCCAAGACACCCACGCGCAACGTAGCCGTG
GCCGTGGCCGGTTCAGCGGTGATCACCAAGACCATCGAGATGGACGCCGGGCTGTCCGACGACGACATGGAAAACCAGCT
CAAGATCGAGGCCGATCAATACATTCCTTATCCGCTGGATGAGGTGGCCATCGATTTTGAAGTGCTGGGCGTGTCACCGC
GTAGCGCCGAGCGGGTCGAGGTGCTATTGGCGGCCTGTCGCAAGGAGAACGTCGAGGTTCGCGAGGCTGCGCTGGCGTTG
GCCGGGCTGACGGCCAGGGTGGTCGATGTGGAAGCCTACGCACTGGAGCGCGCCTTCGGCCTGCTCGCTACGCAACTGGC
CGCGTCCCAGGAACGTTTGACCGTGGCGGTCATCGATATCGGCGCTACCATGACCACCCTCAGCGTGCTGCACAACGGTC
GGATCATCTATACCCGCGAGCAATTGTTCGGTGGCCGTCAGCTCACCGAGGAAATCCAGCGGCGCTATGGCCTGACACCC
GAGCAGGCCGGTCAGGCAAAGAAGCAGGGTGGCCTGCCGGACGATTACCTCAGCGAGGTGCTGCAACCTTTTCGCGAGGC
CTTGGTGCAGCAGGTTTCGCGGTCCTTGCAGTTTTTCTTCGCTTCGGGCCAGTACAGCGCGGTGGACCACATTTTGTTGG
CTGGAGGCTCGGCATCGGTCGCTGGCCTGGATCGACTGATCGAGCAGCGCCTGGGCACGCCGACCCAGGTGGCCAACCCG
TTTACCAACATGTCCCTGAGCAACAAGGTCAATGCCGGCGCCCTGGCCAGTGACGCGCCGGCGCTGATGATTGCTTGCGG
GCTGGCCCTCAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

56.497

100

0.565
  pilM Acinetobacter baumannii D1279779

56.215

100

0.562
  comM Acinetobacter baylyi ADP1

54.52

100

0.545
  pilM Legionella pneumophila strain ERS1305867

48.023

100

0.48