Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   QNH97_RS01785 Genome accession   NZ_CP125957
Coordinates   393976..396057 (+) Length   693 a.a.
NCBI ID   WP_283555324.1    Uniprot ID   -
Organism   Pseudomonas sp. G2-4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 388976..401057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH97_RS01765 (QNH97_01765) comM 391187..392251 (+) 1065 WP_283555320.1 pilus assembly protein PilM Machinery gene
  QNH97_RS01770 (QNH97_01770) - 392251..392817 (+) 567 WP_283555321.1 PilN domain-containing protein -
  QNH97_RS01775 (QNH97_01775) pilO 392814..393437 (+) 624 WP_283555322.1 type 4a pilus biogenesis protein PilO -
  QNH97_RS01780 (QNH97_01780) - 393434..393979 (+) 546 WP_283555323.1 pilus assembly protein PilP -
  QNH97_RS01785 (QNH97_01785) pilQ 393976..396057 (+) 2082 WP_283555324.1 type IV pilus secretin PilQ Machinery gene
  QNH97_RS01790 (QNH97_01790) aroK 396062..396580 (+) 519 WP_024779904.1 shikimate kinase AroK -
  QNH97_RS01795 (QNH97_01795) aroB 396761..397861 (+) 1101 WP_283555325.1 3-dehydroquinate synthase -
  QNH97_RS01800 (QNH97_01800) - 397872..399446 (+) 1575 WP_283555326.1 AAA family ATPase -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 74930.13 Da        Isoelectric Point: 5.8322

>NTDB_id=833652 QNH97_RS01785 WP_283555324.1 393976..396057(+) (pilQ) [Pseudomonas sp. G2-4]
MNRFLSAFGISLWIALLSPMVHAASLKTLDVAALPGDRVELKLTFDGPPPTPRGYTTDQPARIALDLPGVTNQLTSKSRD
LGGGNARSATVVEAGDRTRLIIGLTQLAPYNTRVEGNNLFVVVGKGVVAPKANANSQAARPAVASAAPARVKAPVGKAIR
GVDFQRGTQGEGNVVIDLSDPSIAPDIQEREGKIILNFARTQLPEPLRVRLDVKDFATPVQFVNATAGSDRATISIEPSG
TFDYSTYQTDNKLTVSVRPMTAEDLQKRNTDRAAYSGEKLSLNFQDIEVRSVLQLIADFTNLNLVASDTVQGGITLRLQN
VPWDQALDLVLKTKGLDKRKVGNVLLVAPADEIAARERQELESQKQIADLAPLRRELLQVNYAKAADIAKLFQSVTSAEA
KADERGTITVDERTNNIIAYQTQDRLDELRRIVAQLDIPVRQVMIEARIVEANVDYDKSLGVRWGGSIQNKGNWNSSGVT
TGTSTTIGTPGSTGTNQPFVDLGASGNTSGIGIAFITDNVLLDLELTAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIP
YQEASSSGATSVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNKVQEVPPIKKNEVNAKVLVNDGETIVIGGVFS
NTQSKVVDKVPFLGDVPYLGRLFRRDVVSEKKSELLVFLTPRIMNNQAIAVSR

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=833652 QNH97_RS01785 WP_283555324.1 393976..396057(+) (pilQ) [Pseudomonas sp. G2-4]
ATGAACAGGTTTTTGTCAGCCTTCGGTATTTCGCTATGGATAGCGCTGTTGTCGCCGATGGTTCACGCGGCCAGTCTGAA
GACGCTGGATGTCGCGGCGTTGCCGGGTGACCGCGTCGAGTTGAAGCTCACCTTCGACGGGCCGCCGCCCACACCCAGGG
GCTACACCACCGATCAACCGGCCCGGATCGCACTGGATCTGCCCGGCGTGACCAATCAACTGACCAGCAAGAGCCGCGAT
CTGGGCGGCGGCAATGCCCGCAGCGCCACAGTAGTCGAGGCGGGCGACCGCACGCGGTTGATCATCGGCCTTACCCAACT
GGCGCCGTATAACACCCGGGTCGAGGGTAACAACCTGTTCGTGGTGGTGGGCAAGGGTGTCGTAGCGCCCAAGGCCAATG
CCAATTCCCAGGCTGCCCGTCCGGCGGTCGCCAGTGCTGCGCCGGCCAGGGTCAAGGCGCCCGTGGGCAAGGCTATCCGT
GGCGTGGATTTCCAGCGCGGAACCCAGGGTGAAGGCAATGTGGTGATCGATCTGTCGGATCCCTCCATCGCCCCGGACAT
CCAGGAGCGCGAAGGCAAGATCATCCTCAATTTCGCCAGGACCCAGTTGCCTGAACCGCTGCGGGTGCGCCTGGATGTCA
AGGACTTCGCTACCCCGGTGCAATTCGTCAATGCCACTGCTGGAAGCGACCGAGCGACGATCAGCATCGAACCGAGCGGT
ACCTTCGATTACTCGACCTACCAGACCGACAACAAGCTGACCGTCAGCGTCCGGCCCATGACCGCCGAGGATCTGCAGAA
ACGCAACACCGACCGTGCTGCCTACAGCGGTGAAAAGCTGTCCCTGAACTTCCAGGACATCGAAGTGCGTTCGGTCCTGC
AGTTGATCGCCGACTTCACCAACCTGAACCTGGTGGCCAGCGACACGGTGCAGGGCGGCATCACCCTGCGGCTACAGAAC
GTGCCTTGGGACCAGGCGCTGGACCTGGTGCTCAAGACCAAAGGGCTGGACAAGCGCAAGGTTGGCAACGTGTTGCTGGT
GGCTCCGGCCGATGAAATCGCGGCGCGCGAGCGCCAGGAACTGGAGTCCCAGAAGCAGATTGCAGACCTGGCGCCGCTGC
GGCGCGAGCTGCTGCAGGTCAACTACGCAAAAGCCGCAGACATCGCCAAGCTGTTCCAGTCAGTGACCAGTGCCGAAGCG
AAGGCCGATGAGCGCGGTACGATCACGGTGGATGAGCGAACCAACAATATCATTGCCTACCAGACCCAGGACCGGCTCGA
CGAACTGCGCCGGATCGTGGCGCAGCTGGATATTCCAGTGCGCCAGGTGATGATCGAGGCGCGGATCGTCGAGGCTAACG
TCGATTACGACAAAAGCCTGGGCGTGCGTTGGGGCGGCTCGATACAGAACAAGGGCAACTGGAACTCCTCCGGGGTTACC
ACCGGCACCTCCACGACCATTGGCACGCCGGGCAGTACCGGCACCAACCAGCCGTTCGTCGACCTGGGCGCTTCCGGCAA
CACCTCCGGGATTGGTATCGCGTTCATTACCGACAACGTTTTGCTGGACCTGGAGCTGACGGCCATGGAAAAAACCGGCA
ACGGCGAAATCGTCTCCCAGCCCAAGGTGGTGACGTCCGACAAGGAGACCGCGAAAATCCTCAAGGGCACGGAAATCCCC
TATCAGGAAGCCAGCTCCAGCGGTGCCACGTCGGTGTCGTTCAAGGAGGCCTCGCTGTCGCTGGAGGTGACGCCACAGAT
CACTCCGGACAACCGCATCATCATGGAGGTCAAGGTCACCAAGGATGAGCCGGACTACCTGAACAAGGTGCAGGAGGTGC
CGCCGATCAAGAAAAACGAGGTCAACGCCAAGGTCCTGGTCAACGATGGCGAGACCATTGTGATTGGCGGGGTTTTCTCA
AATACTCAGAGCAAGGTTGTAGATAAGGTGCCATTTCTTGGCGATGTGCCGTATCTTGGCCGCCTTTTCCGGCGTGATGT
GGTTTCGGAGAAAAAATCCGAGCTGCTGGTGTTCCTCACTCCGCGTATCATGAACAACCAGGCGATTGCTGTGAGTCGTT
GA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(38-122)

Bacterial type II/III secretion system short domain (Secretin_N)

(377-442)

Bacterial type II and III secretion system protein (Secretin)

(528-684)

Secretin and TonB N terminus short domain (STN)

(303-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

72.74

100

0.755
  comQ Acinetobacter baylyi ADP1

42.424

100

0.424
  pilQ Acinetobacter baumannii strain A118

38.451

100

0.416
  pilQ Acinetobacter baumannii D1279779

38.451

100

0.416
  pilQ Legionella pneumophila strain Lp02

38.848

97.691

0.38
  pilQ Legionella pneumophila strain ERS1305867

38.848

97.691

0.38