Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QMY55_RS01065 Genome accession   NZ_CP125947
Coordinates   248746..250290 (+) Length   514 a.a.
NCBI ID   WP_283486886.1    Uniprot ID   -
Organism   Comamonas resistens strain ZM22     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 243746..255290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY55_RS01040 (QMY55_01040) - 243876..244394 (+) 519 WP_283486881.1 DUF2165 family protein -
  QMY55_RS01045 (QMY55_01045) - 244471..245799 (-) 1329 WP_283486882.1 sulfatase -
  QMY55_RS01050 (QMY55_01050) - 246007..246999 (-) 993 WP_283486883.1 Bug family tripartite tricarboxylate transporter substrate binding protein -
  QMY55_RS01055 (QMY55_01055) - 247044..248030 (-) 987 WP_283486884.1 tripartite tricarboxylate transporter substrate binding protein -
  QMY55_RS01060 (QMY55_01060) - 248124..248660 (+) 537 WP_283486885.1 MarR family winged helix-turn-helix transcriptional regulator -
  QMY55_RS01065 (QMY55_01065) comM 248746..250290 (+) 1545 WP_283486886.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QMY55_RS01070 (QMY55_01070) - 250304..251233 (-) 930 WP_283486887.1 LysR substrate-binding domain-containing protein -
  QMY55_RS01075 (QMY55_01075) - 251342..252547 (+) 1206 WP_328517812.1 YbfB/YjiJ family MFS transporter -
  QMY55_RS01080 (QMY55_01080) - 252656..253720 (+) 1065 WP_283486889.1 nitronate monooxygenase family protein -
  QMY55_RS01085 (QMY55_01085) - 253862..254719 (+) 858 WP_283486890.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 54700.47 Da        Isoelectric Point: 7.1914

>NTDB_id=833634 QMY55_RS01065 WP_283486886.1 248746..250290(+) (comM) [Comamonas resistens strain ZM22]
MGLALIQSRALLGLDAPGVTVEVHLANGLPSFTLVGLADVEVKEARERVRAAIVNAGLEFPNNKRITVNLAPADLPKDSG
RFDLPIALGILAASGQIDAARLADYEFAGELSLTGALRPVRGALATALALQRQQHSVRLVLPPESAQEAAFVPAIEVFSA
LHLLDVVRQFIAHEAQPDLEADQATAAGWQRVQTLSAQAQSHGLDLREVRGQVQAKRALEIAAAGAHGVLMIGPPGSGKS
MLAQRFASLLPPMSDEEALEAAAVASLCGRFSAAQWRQRPFASPHHTASSVALVGGGSPPRPGEISYAHGGALFLDELPE
FARSALEALREPLETGRITIVRAAQRAEFPARFQLIAAMNPCPCGYWGSRVRACRCTPDQVARYQARISGPLLDRIDLHV
EVAALPPQELLAVAEGESSADVQQRVAQARERAMQRQGQPNHLLQGAQLDAHLQLDPDALAFAHKAAARLGWSARGTHRA
LKVARTIADLAGSDGIAQAHVAEALQYRRALMQA

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=833634 QMY55_RS01065 WP_283486886.1 248746..250290(+) (comM) [Comamonas resistens strain ZM22]
ATGGGACTTGCACTGATTCAAAGCCGTGCCTTGCTGGGCCTGGATGCGCCCGGCGTCACCGTGGAAGTCCATCTGGCCAA
CGGCCTGCCGTCGTTCACCTTGGTGGGGCTGGCCGATGTGGAAGTCAAGGAAGCGCGCGAACGCGTGCGTGCGGCCATCG
TCAATGCGGGGCTGGAGTTCCCCAATAACAAGCGCATCACCGTCAACCTCGCACCTGCCGATTTGCCCAAGGATTCCGGA
CGCTTTGATTTGCCGATTGCCCTGGGCATTCTGGCGGCCAGTGGCCAGATTGACGCGGCCAGGCTGGCGGATTACGAGTT
TGCGGGCGAGCTTTCGCTGACCGGCGCGCTGCGCCCGGTGCGCGGGGCTCTGGCCACGGCGCTGGCCCTGCAACGTCAGC
AGCACAGCGTGCGGCTGGTACTGCCGCCAGAAAGCGCGCAGGAGGCCGCTTTTGTTCCGGCCATCGAAGTCTTCAGCGCC
TTGCATCTGCTCGATGTGGTGCGGCAGTTCATCGCCCATGAAGCGCAGCCTGATCTGGAGGCCGATCAAGCGACAGCGGC
CGGCTGGCAGCGCGTGCAGACCTTATCCGCGCAAGCGCAGAGCCATGGACTGGATCTGCGCGAGGTACGCGGTCAGGTAC
AGGCCAAGCGCGCTCTTGAAATTGCAGCTGCTGGCGCGCATGGGGTCTTGATGATCGGCCCGCCGGGCTCTGGAAAGTCC
ATGCTGGCCCAGCGTTTTGCCAGCCTGCTGCCGCCCATGAGCGACGAGGAGGCACTGGAGGCGGCGGCCGTCGCCAGCCT
CTGCGGTCGTTTTAGCGCCGCGCAATGGCGTCAGCGCCCGTTTGCATCGCCCCATCACACGGCCAGCTCGGTGGCGCTGG
TTGGTGGTGGCTCGCCGCCCCGGCCCGGAGAGATTTCATACGCCCATGGCGGTGCGCTATTTTTAGATGAGCTGCCCGAG
TTTGCCCGCAGTGCGCTGGAGGCCTTGCGCGAGCCGTTGGAGACGGGGCGTATCACCATCGTCAGGGCGGCGCAGCGCGC
GGAATTTCCGGCGCGCTTTCAGCTGATTGCGGCCATGAATCCCTGCCCCTGCGGCTACTGGGGTTCGCGTGTGCGGGCCT
GTCGCTGCACGCCCGATCAGGTAGCGCGCTATCAGGCTCGCATCAGCGGGCCGCTGCTGGACCGCATCGATCTGCATGTG
GAAGTGGCGGCGCTGCCGCCGCAGGAGCTGCTGGCTGTGGCTGAAGGCGAAAGCAGTGCCGATGTGCAGCAACGCGTGGC
CCAGGCGCGTGAACGGGCCATGCAGCGCCAGGGCCAGCCCAACCATTTGCTGCAGGGCGCGCAGCTTGATGCTCATCTGC
AGCTCGACCCGGATGCGTTGGCCTTTGCCCACAAGGCTGCAGCCCGTCTGGGCTGGTCCGCACGCGGCACGCACCGCGCG
CTGAAGGTGGCGCGCACGATTGCCGATCTAGCAGGCTCGGACGGCATCGCCCAGGCCCATGTGGCCGAGGCATTGCAGTA
CCGTAGAGCCCTGATGCAGGCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(205-409)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(416-508)

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.838

99.416

0.525
  comM Vibrio campbellii strain DS40M4

51.765

99.222

0.514
  comM Glaesserella parasuis strain SC1401

50.487

99.805

0.504
  comM Haemophilus influenzae Rd KW20

50.294

99.416

0.5
  comM Legionella pneumophila str. Paris

47.206

100

0.477
  comM Legionella pneumophila strain ERS1305867

47.206

100

0.477
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.773

99.611

0.426