Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   Fi14EGH31_RS06560 Genome accession   NZ_AP024085
Coordinates   1221381..1223231 (+) Length   616 a.a.
NCBI ID   WP_200765266.1    Uniprot ID   A0A7I8DY23
Organism   Faecalibacillus intestinalis strain 14EGH31     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1216381..1228231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Fi14EGH31_RS06545 (Fi14EGH31_12480) - 1217382..1218611 (+) 1230 WP_234697836.1 glutamate-5-semialdehyde dehydrogenase -
  Fi14EGH31_RS06550 (Fi14EGH31_12490) - 1218715..1219179 (+) 465 WP_158546503.1 MarR family winged helix-turn-helix transcriptional regulator -
  Fi14EGH31_RS06555 (Fi14EGH31_12500) - 1219166..1221388 (+) 2223 WP_200765265.1 ABC transporter ATP-binding protein -
  Fi14EGH31_RS06560 (Fi14EGH31_12510) rcrQ 1221381..1223231 (+) 1851 WP_200765266.1 ABC transporter ATP-binding protein Regulator
  Fi14EGH31_RS06565 (Fi14EGH31_12520) - 1223308..1224024 (+) 717 WP_200765267.1 GntR family transcriptional regulator -
  Fi14EGH31_RS06570 (Fi14EGH31_12530) - 1224085..1224543 (+) 459 WP_022001761.1 small multi-drug export protein -
  Fi14EGH31_RS06575 (Fi14EGH31_12540) - 1224583..1225623 (+) 1041 WP_200765268.1 molybdopterin-binding protein -
  Fi14EGH31_RS06580 (Fi14EGH31_12550) - 1225586..1226467 (-) 882 WP_107029338.1 LysR family transcriptional regulator -
  Fi14EGH31_RS06585 (Fi14EGH31_12560) - 1226578..1227855 (+) 1278 WP_117347006.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 68597.91 Da        Isoelectric Point: 5.7715

>NTDB_id=83352 Fi14EGH31_RS06560 WP_200765266.1 1221381..1223231(+) (rcrQ) [Faecalibacillus intestinalis strain 14EGH31]
MSNERRRQGPRGPMGHGMRGNGEKAKNFKGTLKKLFVYLKPYYFKLAVVIIFAAGSTVFTIVGPKILAKATDKLSEGIMA
KVSNTGGIDFDYIGMICLILVGFYLVSALFSFIQGFITSSISQKVAYDLRSSLSKKMSRMPLSYFDRHSSGDTLSRVTND
IDTIAQSLNQSLSQVITSSVTVVGIFIMMLTISVKMTLIAVLVLPLSMLLIMFVMKHSQKYFSRQQKSLGDVNGHIEEMY
GAHDVVKAFNGEEDSVKTFNEYNDALYDSAWKSQFLSGLMQPLSNFVGNLGYVSVCLLGGFLAGGNTITIGDIQAFIQYV
RQFNQPIAQLAQTMNMLQSTAAAAERVFEFLEEEELEVETVKIETDEVEKLHGSVTFNQVNFGYLPEKTIIHDFNMHVHA
GQTVAIVGPTGAGKTTIVKLLMRFYELNKGSIMIDGHDIKDFSRHDLRSLFGMVLQDTWLFNGTIKENLMYGKLDASDEE
VKNACEMAYVDHFVNTLEDGYDTVLDEETSNISQGQKQLLTIARAFLKDPKILILDEATSSVDTRTEVLIQKGMEKLMEG
RTSFVIAHRLSTIRDANTIIVMKDGDIVEIGNHDELLEKGGFYASLYQSQFEGSEI

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=83352 Fi14EGH31_RS06560 WP_200765266.1 1221381..1223231(+) (rcrQ) [Faecalibacillus intestinalis strain 14EGH31]
ATGAGTAATGAAAGAAGAAGACAAGGGCCTCGTGGACCAATGGGTCATGGAATGAGAGGTAATGGTGAAAAAGCCAAGAA
TTTTAAAGGAACATTAAAGAAATTATTTGTTTATTTAAAACCTTATTATTTTAAATTAGCGGTTGTTATTATTTTTGCAG
CTGGTTCAACAGTATTTACGATTGTAGGACCAAAGATCCTAGCAAAAGCAACAGATAAATTATCTGAAGGAATTATGGCC
AAGGTAAGTAATACAGGAGGAATTGATTTTGATTATATTGGTATGATCTGTTTGATTCTTGTTGGTTTCTATCTTGTCAG
TGCACTCTTTAGTTTTATTCAAGGATTTATTACATCTTCGATTTCACAAAAAGTTGCTTATGATTTAAGAAGCTCTTTAT
CTAAGAAGATGTCAAGAATGCCTTTAAGTTATTTTGATAGACATTCTAGTGGAGATACTTTAAGTAGAGTAACCAATGAT
ATTGATACAATTGCACAATCACTCAATCAAAGTTTATCGCAAGTGATTACATCTTCTGTTACAGTTGTTGGAATCTTTAT
TATGATGCTTACGATTTCAGTAAAGATGACTTTGATTGCGGTACTTGTTTTACCACTTTCGATGTTACTTATTATGTTTG
TTATGAAACATTCACAAAAGTATTTTAGTAGACAACAAAAAAGTTTAGGGGATGTCAATGGTCATATTGAAGAAATGTAT
GGTGCTCATGATGTTGTCAAAGCATTTAATGGGGAAGAAGATTCTGTTAAAACTTTTAATGAATATAATGATGCGCTTTA
TGATTCAGCATGGAAATCTCAATTTTTATCAGGTTTAATGCAACCTTTAAGTAACTTTGTAGGAAACTTAGGATATGTAA
GTGTTTGTTTATTAGGTGGTTTTTTAGCAGGGGGTAATACGATTACGATTGGTGATATTCAAGCCTTTATCCAATATGTA
CGCCAATTCAATCAACCAATTGCCCAACTTGCTCAAACAATGAATATGTTACAAAGTACAGCTGCCGCTGCGGAACGTGT
TTTTGAATTCTTAGAGGAAGAAGAATTAGAAGTTGAAACCGTTAAAATTGAAACAGATGAAGTTGAAAAATTACATGGTT
CAGTTACTTTCAATCAAGTTAATTTTGGTTATTTACCAGAAAAAACAATTATTCATGATTTCAATATGCATGTTCATGCT
GGACAAACAGTCGCTATTGTTGGTCCAACAGGAGCAGGAAAAACAACGATTGTTAAATTGTTGATGCGCTTTTATGAATT
AAATAAAGGTTCAATTATGATCGATGGTCATGATATTAAAGATTTTTCAAGACATGATTTAAGAAGTTTGTTTGGAATGG
TTTTACAAGATACATGGCTTTTTAATGGAACAATTAAGGAAAACTTGATGTATGGTAAATTAGATGCCAGTGATGAAGAA
GTAAAAAATGCCTGTGAAATGGCGTATGTAGATCATTTTGTCAATACCTTAGAAGATGGTTATGATACGGTTCTTGATGA
AGAAACATCAAATATTTCACAAGGACAAAAACAATTATTGACGATTGCTAGAGCGTTTCTAAAAGATCCTAAAATTCTTA
TTTTAGATGAAGCAACTTCTTCAGTTGATACACGTACAGAAGTGCTTATTCAAAAAGGTATGGAAAAATTAATGGAAGGA
CGTACAAGCTTTGTTATTGCACACCGTCTATCAACGATTCGTGATGCTAATACAATCATTGTCATGAAAGATGGCGATAT
TGTAGAAATTGGTAATCATGATGAATTGTTAGAAAAAGGTGGATTCTATGCCTCACTTTATCAATCACAATTTGAAGGTA
GCGAAATTTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(392-540)

ABC transporter transmembrane region (ABC_membrane)

(47-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.63

94.643

0.489

Multiple sequence alignment