Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QM342_RS10310 Genome accession   NZ_CP125895
Coordinates   2096874..2097269 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CHAL5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2091874..2102269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QM342_RS10285 (QM342_10285) thiE 2092336..2092977 (-) 642 WP_000483164.1 thiamine phosphate synthase -
  QM342_RS10290 (QM342_10290) thiM 2092979..2093770 (-) 792 WP_283482981.1 hydroxyethylthiazole kinase -
  QM342_RS10295 (QM342_10295) thiD 2093754..2094584 (-) 831 WP_000594942.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  QM342_RS10300 (QM342_10300) tenA 2094577..2095266 (-) 690 WP_000396072.1 thiaminase II -
  QM342_RS10305 (QM342_10305) sceD 2095790..2096485 (-) 696 WP_000752005.1 lytic transglycosylase SceD -
  QM342_RS10310 (QM342_10310) ssb 2096874..2097269 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  QM342_RS10315 (QM342_10315) - 2097463..2097903 (+) 441 WP_000846746.1 YwpF-like family protein -
  QM342_RS10320 (QM342_10320) fabZ 2097962..2098402 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QM342_RS10325 (QM342_10325) murA 2098436..2099701 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  QM342_RS10330 (QM342_10330) - 2099812..2100045 (-) 234 WP_000384523.1 DUF1146 family protein -
  QM342_RS10335 (QM342_10335) - 2100177..2100269 (-) 93 WP_001790611.1 hypothetical protein -
  QM342_RS10340 (QM342_10340) - 2100605..2101009 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=833449 QM342_RS10310 WP_000932694.1 2096874..2097269(-) (ssb) [Staphylococcus aureus strain CHAL5]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=833449 QM342_RS10310 WP_000932694.1 2096874..2097269(-) (ssb) [Staphylococcus aureus strain CHAL5]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992