Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QMY49_RS14555 Genome accession   NZ_CP125875
Coordinates   3076166..3077689 (-) Length   507 a.a.
NCBI ID   WP_283312147.1    Uniprot ID   -
Organism   Vibrio harveyi strain SB1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3071166..3082689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY49_RS14530 (QMY49_14530) - 3071501..3072487 (+) 987 WP_005450998.1 serine/threonine protein kinase -
  QMY49_RS14535 (QMY49_14535) - 3072522..3073124 (+) 603 WP_005451000.1 thiol:disulfide interchange protein DsbA/DsbL -
  QMY49_RS14540 (QMY49_14540) - 3073181..3074059 (-) 879 WP_017818137.1 acyltransferase -
  QMY49_RS14545 (QMY49_14545) - 3074224..3075180 (+) 957 WP_045491649.1 DUF2860 domain-containing protein -
  QMY49_RS14550 (QMY49_14550) - 3075330..3076163 (+) 834 WP_005451004.1 GGDEF domain-containing protein -
  QMY49_RS14555 (QMY49_14555) comM 3076166..3077689 (-) 1524 WP_283312147.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QMY49_RS14560 (QMY49_14560) ilvG 3078153..3079799 (+) 1647 WP_283312149.1 acetolactate synthase 2 catalytic subunit -
  QMY49_RS14565 (QMY49_14565) ilvM 3079811..3080095 (+) 285 WP_005440786.1 acetolactate synthase 2 small subunit -
  QMY49_RS14570 (QMY49_14570) ilvE 3080108..3081046 (+) 939 WP_114092187.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54996.96 Da        Isoelectric Point: 9.2602

>NTDB_id=833248 QMY49_RS14555 WP_283312147.1 3076166..3077689(-) (comM) [Vibrio harveyi strain SB1]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIVNSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDKLKNYEFVGELALSGGLRPVKGVLPAALAANKKQRRLVVPHANGDQAALVGKEQHKSAQSL
LEVCAELCGQHQLNLYQTPKKKETKTHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASVASLTQSEINEHNWKTRPFRAPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLSEGGDR
GEPTATVKERVNQARNDMLNRSGKVNALLGSREIEAFCPLQKSDAEFLENALHRLGLSIRAYHRIIKVARTIADLEGSPQ
IERTHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=833248 QMY49_RS14555 WP_283312147.1 3076166..3077689(-) (comM) [Vibrio harveyi strain SB1]
ATGGGGCTGGCAATCATTCATAGTCGAGCAAGTGTGGGTGTGCAAGCGCCGTCGGTAAGCGTGGAAGTCCACATCAGCAA
TGGGATGCCGGGGTTTACGCTGGTGGGTCTACCGGAAACCACAGTAAAAGAATCGAAAGATCGTGTCCGAAGTGCGATCG
TTAATTCCAACTTTCAGTTCCCAGCAAAACGAATTACGGTCAATTTGGCTCCTGCTGACTTGCCCAAAGAAGGTGGGCGC
TTTGATCTGCCGATTGCATTAGGGATTTTGGCTGCTTCAGAACAAATCGCGACAGATAAGCTCAAAAACTACGAATTTGT
TGGTGAATTAGCCCTTTCTGGAGGGCTGAGACCTGTAAAAGGCGTGCTACCTGCTGCGTTGGCTGCGAACAAAAAACAGC
GTCGTTTAGTGGTGCCTCATGCGAATGGTGATCAAGCGGCATTAGTGGGTAAAGAGCAGCATAAATCAGCCCAATCGTTA
CTGGAAGTGTGTGCTGAGCTTTGTGGTCAGCATCAATTGAATTTATATCAAACCCCGAAGAAAAAAGAGACCAAAACGCA
CGGTCGTGATTTACAAGACATCATTGGTCAACAACAAGGTAAACGCGCTTTAGAAATTGCTGCGGCTGGCAATCACAACC
TACTTTTTCTTGGTCCTCCAGGTACAGGTAAAACCATGTTGGCATCACGGCTATGTGATTTATTGCCAGAGATGAGCGAT
GAAGAAGCCATGGAAACCGCTTCTGTGGCGTCGCTGACTCAAAGTGAAATCAATGAACACAATTGGAAGACGCGACCGTT
CCGCGCTCCGCACCATTCCAGCTCAATGGCTGCTTTAGTCGGAGGTGGCTCAGTACCAAGACCGGGCGAGATATCTCTAG
CTCATAATGGGTTGTTGTTTTTAGATGAGATGCCGGAGTTTGACCGTAAGGTGCTCGATTCTTTGCGAGAGCCTTTGGAG
TCAGGAGAAATTATTATCTCTAGAGCACAAGGTAAAACGCGCTTTCCTGCTCGATTCCAATTGGTTGGTGCATTAAACCC
CAGTCCGACAGGATATTATGAAGGGAATCAAGCACGGACGAATCCACAAGCTATTTTGCGCTACCTTGGACGTTTATCAG
GTCCGCTTCTAGATCGTTTTGACATGTCGCTGGAAATTCCTGCTTTGCCGAAAGGCACATTATCTGAAGGGGGCGATCGA
GGGGAACCAACAGCGACGGTCAAGGAACGAGTAAATCAAGCACGCAATGATATGCTCAATCGCAGCGGTAAGGTTAATGC
ACTGTTGGGCAGTCGAGAGATTGAAGCGTTTTGCCCGCTACAAAAAAGCGATGCCGAGTTTCTAGAGAACGCTTTGCACC
GCTTGGGATTGTCGATTCGCGCGTATCACCGCATCATCAAAGTTGCGCGTACTATCGCTGATCTGGAAGGTTCACCACAA
ATTGAACGAACTCACCTTGCTGAAGCATTGGGGTATCGAGCGATGGATAGATTACTCAAACAGTTGACGGCGCAGGCAGT
ATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

98.225

100

0.982
  comM Vibrio cholerae strain A1552

85.01

100

0.85
  comM Haemophilus influenzae Rd KW20

66.075

100

0.661
  comM Glaesserella parasuis strain SC1401

64.314

100

0.647
  comM Legionella pneumophila str. Paris

49.799

98.225

0.489
  comM Legionella pneumophila strain ERS1305867

49.799

98.225

0.489
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.118

100

0.444