Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MPUCK001_RS22965 Genome accession   NZ_AP023452
Coordinates   4871311..4872831 (+) Length   506 a.a.
NCBI ID   WP_110123562.1    Uniprot ID   -
Organism   Citrobacter koseri strain MPUCK001     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4866311..4877831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPUCK001_RS22945 (MPUCK001_44900) ilvE 4867867..4868796 (-) 930 WP_012131120.1 branched-chain-amino-acid transaminase -
  MPUCK001_RS22950 (MPUCK001_44910) ilvM 4868814..4869077 (-) 264 WP_012131119.1 acetolactate synthase 2 small subunit -
  MPUCK001_RS22955 (MPUCK001_44920) ilvG 4869074..4870720 (-) 1647 WP_049011329.1 acetolactate synthase 2 catalytic subunit -
  MPUCK001_RS23570 ilvX 4870723..4870773 (-) 51 WP_202401504.1 peptide IlvX -
  MPUCK001_RS22960 ilvL 4870861..4870959 (-) 99 WP_001311244.1 ilv operon leader peptide -
  MPUCK001_RS22965 (MPUCK001_44930) comM 4871311..4872831 (+) 1521 WP_110123562.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MPUCK001_RS22970 (MPUCK001_44940) maoP 4872858..4873196 (-) 339 WP_012131115.1 macrodomain Ori organization protein MaoP -
  MPUCK001_RS22975 (MPUCK001_44950) hdfR 4873303..4874148 (+) 846 WP_012131114.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55044.12 Da        Isoelectric Point: 7.6395

>NTDB_id=83308 MPUCK001_RS22965 WP_110123562.1 4871311..4872831(+) (comM) [Citrobacter koseri strain MPUCK001]
MSLSIVHTRAALGVNAPPITIEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLTTNKLNEYELVGELALTGALRGVPGAISSATEAIRAGRHIIVAKENATEVGLISGEGCLIADHL
QTVCAFLEGKRDLEKPVSTDSDACLLHDDLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPSLSDK
EALESAAILSLVNADTVQRQWKRRPFRSPHHSASLTAMVGGGSIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLIAAMNPSPTGHYQGNHNRCSPEQTLRYLSRLSGPFLDRFDLSLEIPLPPPGILSQAAVKS
EDSATVKVRVISARKRQYERQGKLNAHLDSQGIRKYCSLHSDDAHWLEETLIHLGLSIRAWQRLLKVARTIADLEQTENI
TRLHLQEAVGYRAIDRLLIHLQKLLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=83308 MPUCK001_RS22965 WP_110123562.1 4871311..4872831(+) (comM) [Citrobacter koseri strain MPUCK001]
ATGTCACTGTCGATTGTTCACACACGCGCCGCACTTGGCGTTAATGCGCCGCCAATAACCATCGAGGTGCATATCAGTAA
TGGCCTGCCGGGTTTAACAATGGTTGGGCTACCAGAAACGACGGTAAAGGAGGCCCGGGATCGGGTTCGCAGCGCAATCA
TCAATAGCGGGTATGAATTTCCGGCGAAGAAAATCACCATTAATCTGGCTCCGGCAGATTTACCCAAAGAGGGCGGAAGA
TATGATTTACCTATCGCAATTGCGCTTCTGGCAGCGTCAGAGCAACTTACAACAAATAAGCTTAATGAATATGAACTGGT
GGGCGAACTGGCCCTTACAGGTGCGTTACGTGGCGTTCCAGGCGCGATATCCAGTGCAACCGAGGCGATTCGGGCAGGCA
GACATATCATTGTTGCAAAAGAGAATGCAACAGAAGTTGGGCTAATCAGCGGAGAGGGATGCCTGATTGCAGATCATCTG
CAAACGGTATGCGCATTTCTGGAAGGGAAACGGGATCTTGAGAAACCAGTCTCTACCGATTCTGACGCCTGTTTACTGCA
TGACGATCTCAGTGATGTTATCGGTCAGGAACAGGGGAAACGAGGCCTGGAAATCACGGCCGCAGGAGGGCACAACCTGC
TGCTGATAGGCCCGCCAGGTACGGGAAAAACCATGCTGGCCAGCCGCATTAATGGGCTACTGCCATCATTAAGCGACAAA
GAAGCGCTGGAAAGTGCGGCGATTCTCAGCCTGGTGAACGCTGATACGGTACAAAGGCAGTGGAAACGACGTCCTTTCCG
CTCGCCTCATCACAGCGCGTCATTAACGGCAATGGTAGGGGGAGGTTCAATACCCGCGCCAGGAGAAATATCGCTGGCGC
ACAACGGTATTTTGTTTCTGGATGAACTGCCTGAGTTTGAGCGACGCACGCTGGATGCGCTGCGTGAACCTATTGAGTCT
GGTCAGATACACCTTTCGCGCACCCGGGCAAAGATCACCTATCCTGCGCGCTTCCAACTGATTGCAGCGATGAATCCCAG
CCCGACCGGTCACTATCAGGGGAACCATAATCGCTGTAGCCCGGAACAGACGTTGCGCTACCTCAGCCGTTTATCCGGCC
CCTTTCTCGATCGATTCGATCTCTCGCTCGAAATTCCCCTGCCACCGCCCGGTATACTCAGCCAGGCAGCGGTGAAAAGC
GAGGACAGCGCTACAGTGAAAGTACGGGTGATATCCGCACGGAAACGCCAGTACGAACGACAGGGGAAGCTAAACGCCCA
TCTGGACAGCCAGGGTATACGAAAGTACTGCTCTCTACACAGTGATGATGCGCACTGGCTGGAGGAGACGCTGATACATC
TGGGATTGTCTATACGAGCCTGGCAGCGCTTACTGAAGGTTGCCCGTACCATTGCCGATCTGGAACAGACGGAGAATATT
ACGCGCCTGCATTTGCAGGAGGCTGTGGGCTATCGGGCAATAGACAGGCTACTGATTCATTTACAAAAACTACTGACGTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.203

100

0.589
  comM Glaesserella parasuis strain SC1401

58.546

100

0.589
  comM Vibrio cholerae strain A1552

59.163

99.209

0.587
  comM Vibrio campbellii strain DS40M4

58.167

99.209

0.577
  comM Legionella pneumophila str. Paris

47.4

98.814

0.468
  comM Legionella pneumophila strain ERS1305867

47.4

98.814

0.468
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.738

99.407

0.435

Multiple sequence alignment