Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   U0027_RS05820 Genome accession   NZ_CP139997
Coordinates   1161468..1162052 (-) Length   194 a.a.
NCBI ID   WP_003502762.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain HAMBI 105     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1156468..1167052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0027_RS05805 (U0027_05805) - 1159212..1159841 (+) 630 WP_003502754.1 MarC family protein -
  U0027_RS05810 (U0027_05810) - 1159968..1161116 (+) 1149 WP_003502756.1 HPP family protein -
  U0027_RS05815 (U0027_05815) - 1161171..1161434 (-) 264 WP_223564850.1 hypothetical protein -
  U0027_RS05820 (U0027_05820) ssb 1161468..1162052 (-) 585 WP_003502762.1 single-stranded DNA-binding protein Machinery gene
  U0027_RS05825 (U0027_05825) uvrA 1162317..1165238 (+) 2922 WP_003502764.1 excinuclease ABC subunit UvrA Machinery gene
  U0027_RS05830 (U0027_05830) - 1165295..1166095 (+) 801 WP_060726210.1 DUF72 domain-containing protein -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 20667.59 Da        Isoelectric Point: 4.7391

>NTDB_id=832924 U0027_RS05820 WP_003502762.1 1161468..1162052(-) (ssb) [Agrobacterium tumefaciens strain HAMBI 105]
MQLPVMMAGGQDDEMAGSVNKVILIGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERKEKTEWHTVVVFNEGLCK
VVEQYVKKGAKLYIEGQLQTRKWQDQTGNDRYSTEIVLQGFNSTLTMLDGRGEGGGAARSGGGDFGGGNDYGSGGGSSYG
GGYDQQSSSRGGSARGGSQPAGGFSNDMDDDIPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=832924 U0027_RS05820 WP_003502762.1 1161468..1162052(-) (ssb) [Agrobacterium tumefaciens strain HAMBI 105]
ATGCAATTGCCGGTCATGATGGCCGGCGGACAGGATGACGAGATGGCTGGTAGCGTAAACAAGGTAATTCTGATCGGGAA
CGTGGGCGCTGATCCCGAAATCCGCCGGACGCAGGATGGCCGCCCCATCGCCAACCTGCGCATCGCCACCTCGGAGACCT
GGCGTGACCGCAATAGCGGCGAGCGCAAGGAAAAGACCGAATGGCACACCGTCGTGGTTTTCAACGAAGGCCTGTGCAAG
GTCGTCGAGCAATATGTCAAGAAGGGCGCCAAGCTCTATATCGAAGGCCAGCTGCAGACCCGCAAATGGCAGGACCAGAC
CGGTAACGACCGTTACTCCACCGAAATCGTGCTGCAGGGCTTCAACTCCACGCTGACCATGCTTGACGGTCGCGGCGAGG
GCGGCGGTGCTGCCCGCAGCGGCGGTGGCGATTTCGGCGGCGGCAACGATTATGGCAGCGGCGGCGGCTCCAGCTATGGC
GGCGGTTACGACCAGCAGTCCTCGTCGCGCGGCGGCTCTGCCCGTGGCGGCAGCCAGCCCGCCGGCGGCTTCTCCAATGA
CATGGACGACGACATCCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(19-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

45.178

100

0.459
  ssb Vibrio cholerae strain A1552

49.153

91.237

0.448
  ssb Neisseria meningitidis MC58

39.665

92.268

0.366
  ssb Neisseria gonorrhoeae MS11

39.665

92.268

0.366