Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   U0027_RS05825 Genome accession   NZ_CP139997
Coordinates   1162317..1165238 (+) Length   973 a.a.
NCBI ID   WP_003502764.1    Uniprot ID   A0A822UY02
Organism   Agrobacterium tumefaciens strain HAMBI 105     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1157317..1170238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0027_RS05805 (U0027_05805) - 1159212..1159841 (+) 630 WP_003502754.1 MarC family protein -
  U0027_RS05810 (U0027_05810) - 1159968..1161116 (+) 1149 WP_003502756.1 HPP family protein -
  U0027_RS05815 (U0027_05815) - 1161171..1161434 (-) 264 WP_223564850.1 hypothetical protein -
  U0027_RS05820 (U0027_05820) ssb 1161468..1162052 (-) 585 WP_003502762.1 single-stranded DNA-binding protein Machinery gene
  U0027_RS05825 (U0027_05825) uvrA 1162317..1165238 (+) 2922 WP_003502764.1 excinuclease ABC subunit UvrA Machinery gene
  U0027_RS05830 (U0027_05830) - 1165295..1166095 (+) 801 WP_060726210.1 DUF72 domain-containing protein -
  U0027_RS05835 (U0027_05835) dusA 1166102..1167061 (-) 960 WP_060726211.1 tRNA dihydrouridine(20/20a) synthase DusA -
  U0027_RS05840 (U0027_05840) - 1167241..1168314 (+) 1074 WP_111834363.1 tyrosine-type recombinase/integrase -
  U0027_RS05845 (U0027_05845) - 1168335..1168532 (-) 198 WP_114835644.1 hypothetical protein -
  U0027_RS05850 (U0027_05850) - 1168529..1168750 (-) 222 WP_112959971.1 hypothetical protein -
  U0027_RS05855 (U0027_05855) - 1169001..1169369 (-) 369 WP_114835645.1 hypothetical protein -
  U0027_RS05860 (U0027_05860) - 1169476..1169703 (+) 228 WP_114835646.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 973 a.a.        Molecular weight: 107011.99 Da        Isoelectric Point: 6.6179

>NTDB_id=832925 U0027_RS05825 WP_003502764.1 1162317..1165238(+) (uvrA) [Agrobacterium tumefaciens strain HAMBI 105]
MSELKTISIRGAREHNLKGIDLDLPRNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLEMMQKPDVDQID
GLSPAISIEQKTTSRNPRSTVGTVTEIYDYMRLLFARVGVPYSPATGLPIESQTVSQMVDRILAFEEGTRLYILAPIVRG
RKGEYKKELADLMKKGFQRVKVDGQFYEIADVPALDKKYKHDIDVVVDRAVVRPDMAARLADSLETCLKLADGLAIAEFA
DKPLPPEETAAGGSANKSLNETHERVLFSEKFACPVSGFTIPEIEPRLFSFNNPFGACPSCDGLGSQQKVDENLIVPEPA
RTLRDGAIAPWAKSSSPYYNQTLEALGKAFGFKLSSKWSDLSKDAQNAILQGTEEKIEFNYQDGARSYKTVKNFEGIVPN
LERRWKETDSAWAREEIERYMSAAPCPACAGYRLKPEALAVKINKLHIGEVTQMSIRMARDWFEVLPENLNAKQNEIAVR
ILKEIRERLRFLNDVGLDYLSLSRNSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNARLLDTLKHLRDIG
NTVIVVEHDEDAILTADYVVDIGPAAGIHGGQVIAEGSPQEVMANPKSLTGKYLSGELGVAVPAERRKPKKGREIKVFGA
RGNNLKNVTAAVPLGVFTAVTGVSGGGKSTFLIETLYKSAARRVMGAREIPAEHDRIDGFEFIDKVIDIDQSPIGRTPRS
NPATYTGAFTPIRDWFAGLPEAKARGYAPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVTCDVCHGKRYNRETLDVT
FKGKSIADVLDMTVEEGVEFFAAVPAVRDKLQSLFDVGLGYIKVGQQANTLSGGEAQRVKLAKELSKRSTGRTLYILDEP
TTGLHFHDVNKLLEMLHALVEQGNSVVVIEHNLEVIKTADWIIDIGPEGGTGGGEVVATGTPEDIVKVERSYTGHFLKEL
LERRPAGKREAAE

Nucleotide


Download         Length: 2922 bp        

>NTDB_id=832925 U0027_RS05825 WP_003502764.1 1162317..1165238(+) (uvrA) [Agrobacterium tumefaciens strain HAMBI 105]
ATGAGTGAACTGAAGACGATTTCCATCCGTGGCGCCCGCGAGCATAACCTCAAGGGCATCGATCTGGATTTGCCGCGCAA
CAAGCTGATCGTCATGACCGGCCTTTCCGGCTCGGGCAAGTCTTCGCTTGCCTTCGATACGATCTATGCCGAAGGCCAGC
GCCGTTATGTCGAAAGCCTCTCGGCCTATGCGCGCCAGTTCCTGGAGATGATGCAGAAGCCGGATGTCGACCAGATCGAC
GGCCTGTCGCCGGCAATCTCCATCGAGCAAAAGACCACCTCGCGCAACCCGCGCTCCACGGTCGGCACGGTCACCGAGAT
CTACGATTATATGCGCCTTCTCTTCGCGCGTGTCGGTGTCCCCTATTCGCCAGCCACCGGCCTGCCGATCGAAAGCCAGA
CTGTCAGCCAGATGGTCGATCGCATTCTCGCTTTCGAGGAAGGTACGCGTCTTTATATTCTTGCGCCGATAGTCCGCGGC
CGCAAAGGCGAATATAAGAAGGAACTCGCCGATCTGATGAAGAAGGGCTTCCAGCGCGTCAAGGTGGATGGCCAGTTCTA
CGAAATCGCCGACGTTCCTGCTCTCGACAAGAAATACAAGCACGACATCGACGTGGTGGTCGATCGCGCCGTCGTGCGCC
CGGACATGGCAGCACGCCTTGCCGACAGTCTCGAGACCTGCCTCAAGCTCGCCGACGGGCTGGCGATTGCGGAATTTGCT
GACAAGCCTTTGCCACCGGAAGAAACCGCCGCTGGCGGCTCCGCCAACAAGTCGCTCAACGAGACCCATGAGCGGGTGCT
GTTTTCGGAAAAATTCGCCTGCCCCGTTTCCGGCTTCACCATTCCGGAAATCGAGCCCCGGCTGTTCTCCTTCAACAACC
CCTTCGGCGCCTGCCCGAGCTGCGATGGCCTTGGCTCGCAGCAGAAGGTGGATGAAAACCTGATCGTTCCGGAACCGGCA
CGAACGCTGCGGGACGGCGCGATAGCTCCCTGGGCCAAATCATCCTCGCCCTATTACAACCAGACGCTGGAAGCACTCGG
CAAGGCCTTCGGTTTCAAACTCTCGAGCAAATGGTCGGACCTTTCGAAGGACGCACAGAACGCCATCCTGCAGGGCACCG
AGGAAAAGATCGAATTCAACTACCAGGACGGCGCCCGCTCCTACAAGACGGTGAAGAATTTCGAAGGCATCGTGCCCAAT
CTGGAGCGTCGCTGGAAAGAGACCGACAGCGCCTGGGCGCGTGAGGAAATCGAACGCTACATGTCGGCGGCCCCCTGCCC
GGCCTGCGCCGGTTATCGCCTGAAGCCGGAAGCGCTCGCCGTCAAGATCAACAAGCTGCATATTGGTGAAGTCACCCAAA
TGTCGATCCGCATGGCGCGCGACTGGTTTGAAGTGCTGCCGGAAAACCTCAACGCCAAGCAGAACGAAATCGCAGTCCGC
ATCCTCAAGGAAATCCGCGAGCGCCTGCGCTTCCTCAATGATGTCGGACTGGATTATCTCAGCCTGTCGCGCAATTCCGG
CACGCTTTCCGGCGGTGAAAGCCAGCGTATCCGTCTGGCCTCGCAGATCGGCTCGGGCCTGACGGGCGTTCTCTATGTTC
TCGACGAGCCGTCAATCGGCCTGCACCAGCGCGACAACGCCCGCCTGCTCGATACGCTGAAACATCTGCGCGATATCGGC
AATACTGTCATCGTGGTCGAACATGACGAAGACGCCATTCTGACGGCCGATTATGTCGTCGATATCGGCCCGGCCGCCGG
CATTCATGGCGGTCAGGTGATTGCCGAAGGATCACCGCAGGAGGTGATGGCCAATCCGAAATCGCTGACCGGCAAATATC
TCTCCGGCGAACTCGGTGTCGCCGTGCCGGCTGAGCGCCGCAAGCCCAAGAAGGGCCGCGAGATCAAGGTGTTTGGCGCA
CGCGGCAACAATCTTAAGAATGTCACGGCAGCTGTGCCGCTCGGTGTTTTCACTGCCGTAACCGGCGTTTCGGGCGGCGG
CAAATCCACCTTCCTGATCGAGACGCTCTACAAGTCGGCGGCGCGCCGGGTGATGGGCGCGCGCGAAATCCCGGCGGAAC
ATGACCGCATCGATGGTTTCGAATTCATCGACAAGGTCATTGATATCGACCAGTCGCCGATTGGCCGCACGCCGCGCTCC
AATCCGGCCACCTATACCGGTGCCTTTACGCCAATCCGCGACTGGTTTGCCGGCCTGCCGGAAGCCAAGGCGCGCGGTTA
CGCGCCGGGCCGTTTCTCCTTCAACGTCAAGGGCGGCCGCTGCGAGGCCTGCCAGGGTGACGGCGTCATCAAGATCGAGA
TGCACTTCCTGCCTGACGTTTACGTCACCTGCGATGTCTGCCACGGCAAGCGTTATAATCGCGAGACGCTTGACGTCACC
TTCAAGGGCAAATCCATCGCCGACGTGCTGGATATGACGGTGGAGGAAGGCGTGGAATTCTTCGCCGCCGTGCCGGCGGT
GCGCGACAAGCTGCAATCGCTTTTCGATGTCGGCCTCGGTTATATCAAGGTCGGCCAGCAGGCCAATACGCTCTCCGGCG
GCGAAGCGCAGCGCGTCAAGCTCGCCAAGGAACTGTCCAAGCGCTCCACAGGTCGCACGCTCTACATTCTCGACGAGCCG
ACGACTGGCCTGCATTTCCACGATGTCAACAAGCTGCTCGAAATGCTGCATGCGCTTGTGGAACAGGGTAATTCCGTCGT
GGTGATCGAGCACAATCTCGAAGTCATCAAGACGGCGGACTGGATCATCGATATCGGGCCTGAGGGCGGCACGGGCGGCG
GCGAAGTGGTGGCGACCGGTACGCCGGAAGACATCGTGAAAGTCGAGCGTTCCTATACCGGTCACTTCCTGAAGGAGCTT
CTGGAGCGCCGGCCAGCCGGAAAACGGGAGGCTGCGGAGTAA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(133-239)

UvrA DNA-binding domain (UvrA_DNA-bind)

(311-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A822UY02

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

57.351

98.561

0.565
  uvrA Streptococcus pneumoniae TIGR4

57.351

98.561

0.565
  uvrA Streptococcus pneumoniae D39

57.351

98.561

0.565