Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LLS04_RS02710 Genome accession   NZ_CP125807
Coordinates   532897..533370 (-) Length   157 a.a.
NCBI ID   WP_323611771.1    Uniprot ID   -
Organism   Erysipelothrix enhydrae strain UCD-4322-04     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 527897..538370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLS04_RS02685 (LLS04_02685) dnaB 528221..529591 (-) 1371 WP_323611766.1 replicative DNA helicase -
  LLS04_RS02690 (LLS04_02690) rplI 529603..530049 (-) 447 WP_013853429.1 50S ribosomal protein L9 -
  LLS04_RS02695 (LLS04_02695) - 530051..532006 (-) 1956 WP_323611767.1 DHH family phosphoesterase -
  LLS04_RS02700 (LLS04_02700) - 532053..532592 (-) 540 WP_323611768.1 DUF2232 domain-containing protein -
  LLS04_RS02705 (LLS04_02705) rpsR 532646..532879 (-) 234 WP_003774357.1 30S ribosomal protein S18 -
  LLS04_RS02710 (LLS04_02710) ssb 532897..533370 (-) 474 WP_323611771.1 single-stranded DNA-binding protein Machinery gene
  LLS04_RS02715 (LLS04_02715) rpsF 533396..533686 (-) 291 WP_003774354.1 30S ribosomal protein S6 -
  LLS04_RS02720 (LLS04_02720) - 533826..534464 (-) 639 WP_323611773.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  LLS04_RS02725 (LLS04_02725) - 534526..535377 (-) 852 WP_323611775.1 LysR family transcriptional regulator -
  LLS04_RS02730 (LLS04_02730) - 535471..536034 (+) 564 WP_323611778.1 chromate transporter -
  LLS04_RS02735 (LLS04_02735) - 536018..536557 (+) 540 WP_323611779.1 chromate transporter -
  LLS04_RS02740 (LLS04_02740) lysS 536595..538079 (-) 1485 WP_323611780.1 lysine--tRNA ligase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17598.38 Da        Isoelectric Point: 4.4023

>NTDB_id=832892 LLS04_RS02710 WP_323611771.1 532897..533370(-) (ssb) [Erysipelothrix enhydrae strain UCD-4322-04]
MINRTILVGRLTRDPELRKTQTGKSVVSFTVACNRRFGQQDETDFINCVAWNQTADFMANYLLKGALVGLEGRIQSRSYE
DATGKRVYVQEVVVDTLQSLESRAQRQEQGASQGQYQNQNSNQGASSYTPSYQADPEPSFSMDDEPVLDITSDDLPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=832892 LLS04_RS02710 WP_323611771.1 532897..533370(-) (ssb) [Erysipelothrix enhydrae strain UCD-4322-04]
ATGATTAATCGCACTATATTAGTGGGTCGTTTAACTCGAGATCCAGAACTTCGTAAAACACAAACTGGTAAATCAGTCGT
TTCGTTTACTGTAGCGTGCAACCGCCGCTTTGGACAACAAGATGAAACTGATTTTATCAATTGTGTGGCTTGGAATCAAA
CAGCTGATTTTATGGCAAATTACTTACTAAAGGGTGCTTTAGTAGGTCTAGAAGGTCGAATTCAATCGAGATCATATGAA
GACGCTACCGGTAAACGTGTATATGTTCAAGAGGTTGTTGTGGATACACTTCAATCACTCGAATCGCGTGCACAACGTCA
AGAACAAGGCGCAAGCCAAGGTCAATATCAGAATCAAAACAGTAATCAAGGTGCATCAAGTTATACACCTTCATACCAAG
CCGATCCTGAACCATCATTCTCAATGGATGATGAGCCAGTTCTCGATATAACCAGTGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

45.882

100

0.497
  ssbA Bacillus subtilis subsp. subtilis str. 168

41.989

100

0.484
  ssb Neisseria meningitidis MC58

37.572

100

0.414
  ssb Neisseria gonorrhoeae MS11

33.526

100

0.369
  ssb Vibrio cholerae strain A1552

32.022

100

0.363