Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QMO40_RS06820 Genome accession   NZ_CP125805
Coordinates   1409871..1410389 (-) Length   172 a.a.
NCBI ID   WP_283385714.1    Uniprot ID   -
Organism   Mannheimia bovis strain 39324.S-11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1404871..1415389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMO40_RS06805 (QMO40_06805) speFL 1405798..1405959 (+) 162 WP_144084206.1 leader peptide SpeFL -
  QMO40_RS06810 (QMO40_06810) speF 1406199..1408361 (+) 2163 WP_283385712.1 ornithine decarboxylase SpeF -
  QMO40_RS06815 (QMO40_06815) potE 1408425..1409738 (+) 1314 WP_283385713.1 putrescine-ornithine antiporter -
  QMO40_RS06820 (QMO40_06820) ssb 1409871..1410389 (-) 519 WP_283385714.1 single-stranded DNA-binding protein Machinery gene
  QMO40_RS06825 (QMO40_06825) uvrA 1410552..1413380 (+) 2829 WP_283385715.1 excinuclease ABC subunit UvrA -
  QMO40_RS06830 (QMO40_06830) - 1413568..1414572 (+) 1005 WP_283385716.1 virulence RhuM family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19137.93 Da        Isoelectric Point: 5.2533

>NTDB_id=832859 QMO40_RS06820 WP_283385714.1 1409871..1410389(-) (ssb) [Mannheimia bovis strain 39324.S-11]
MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRQAEVCGQYLRKGSQVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLGSRQGNDMGAQQGGWGNSAPVGNSYNQGNSNYGYNQTSSSAPQQSKPAPQAE
PAMNNFDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=832859 QMO40_RS06820 WP_283385714.1 1409871..1410389(-) (ssb) [Mannheimia bovis strain 39324.S-11]
ATGGCTGGTATCAACAAAGTAATTATCGTAGGTAACTTAGGTAACGACCCGGAAATGCGTACAATGCCAAACGGCGAAGC
AGTTGCAAATATTAGTGTTGCAACATCAGAAAGCTGGACAGATAAAAACACCGGCGAACGTCGTGAAGTAACAGAATGGC
ATCGTATTGTGTTCTATCGTCGTCAAGCGGAAGTTTGTGGTCAATACTTACGTAAAGGTTCACAAGTTTATGTGGAAGGT
CGCCTACGTACTCGTAAATGGCAAGACCAAAACGGGCAAGATCGTTACACCACAGAAATTCAAGGCGATGTATTACAAAT
GCTAGGCAGTCGTCAAGGCAACGATATGGGGGCTCAGCAAGGCGGTTGGGGTAATTCAGCACCTGTGGGGAATAGCTATA
ATCAAGGTAATAGCAATTATGGCTATAACCAAACTTCAAGCTCTGCACCACAGCAATCTAAACCCGCTCCACAAGCTGAG
CCTGCAATGAATAACTTTGATGATGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

72.778

100

0.762
  ssb Vibrio cholerae strain A1552

53.005

100

0.564
  ssb Neisseria meningitidis MC58

46.857

100

0.477
  ssb Neisseria gonorrhoeae MS11

46.857

100

0.477
  ssb Latilactobacillus sakei subsp. sakei 23K

36.111

100

0.378