Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QMO40_RS06600 Genome accession   NZ_CP125805
Coordinates   1366604..1367800 (+) Length   398 a.a.
NCBI ID   WP_283385682.1    Uniprot ID   -
Organism   Mannheimia bovis strain 39324.S-11     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1361604..1372800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMO40_RS06575 (QMO40_06575) - 1362252..1362740 (+) 489 WP_283385680.1 dihydrofolate reductase -
  QMO40_RS06580 (QMO40_06580) - 1362866..1363096 (+) 231 WP_025236204.1 YgjV family protein -
  QMO40_RS06585 (QMO40_06585) radA 1363150..1364529 (-) 1380 WP_025236203.1 DNA repair protein RadA -
  QMO40_RS06590 (QMO40_06590) pilA 1364711..1365199 (+) 489 WP_025236202.1 prepilin peptidase-dependent pilin Machinery gene
  QMO40_RS06595 (QMO40_06595) pilB 1365220..1366611 (+) 1392 WP_283385681.1 GspE/PulE family protein Machinery gene
  QMO40_RS06600 (QMO40_06600) pilC 1366604..1367800 (+) 1197 WP_283385682.1 type II secretion system F family protein Machinery gene
  QMO40_RS06605 (QMO40_06605) - 1367804..1368460 (+) 657 WP_283385683.1 prepilin peptidase -
  QMO40_RS06610 (QMO40_06610) coaE 1368492..1369127 (+) 636 WP_283385684.1 dephospho-CoA kinase -
  QMO40_RS06615 (QMO40_06615) yacG 1369109..1369294 (+) 186 WP_283385685.1 DNA gyrase inhibitor YacG -
  QMO40_RS06620 (QMO40_06620) holA 1369295..1370317 (-) 1023 WP_283385686.1 DNA polymerase III subunit delta -
  QMO40_RS06625 (QMO40_06625) lptE 1370360..1370848 (-) 489 WP_283385687.1 LPS assembly lipoprotein LptE -

Sequence

Protein


Download         Length: 398 a.a.        Molecular weight: 45565.26 Da        Isoelectric Point: 9.9200

>NTDB_id=832858 QMO40_RS06600 WP_283385682.1 1366604..1367800(+) (pilC) [Mannheimia bovis strain 39324.S-11]
MAKIYEFHWKAVDRFQQKRKGRLLSSSREELESTLLAKGYEQIRVSRNFVFSQNPKKEEISQFLSQLALLVNSAVPLKQA
LVMILQNCRNIKLHLWLSELIQLIESGYAFSQSLERLNKFIANQEIQLIKMGEQSGKLGLILTNLAQSRVKSDKLAKKVK
KILFYPTIVLFISLFLSIGLLVFIVPQFAELYGTKAQALPLITDILFSLSRCLIEQKNLLFTLLLLAVIFFLFFAKRGNW
GTKLKLRLLSKLPIFRQIIEQARIVFFSQNIALMLNAHIPLDVALKSFLSEKSDDPILQKEVEFMLNLLQQGYKFSQGIN
PNVFGLDMPQMIEIGERSGNVAKMCEHISEIYQQKLDYQIDILSQLLEPMLMLLMGVIVGTIIVGLYLPIFDMGSLVE

Nucleotide


Download         Length: 1197 bp        

>NTDB_id=832858 QMO40_RS06600 WP_283385682.1 1366604..1367800(+) (pilC) [Mannheimia bovis strain 39324.S-11]
ATGGCTAAAATTTATGAATTTCATTGGAAAGCGGTGGATCGTTTCCAACAAAAGCGTAAAGGCAGGCTATTATCTTCAAG
CCGAGAAGAGCTTGAAAGCACATTACTTGCAAAAGGTTATGAGCAAATTCGAGTTAGCCGAAACTTTGTCTTTTCGCAAA
ATCCGAAAAAAGAGGAAATCAGCCAATTTTTATCCCAACTGGCATTGTTAGTGAATTCTGCCGTTCCGTTAAAGCAAGCC
TTAGTAATGATTTTACAAAACTGTCGAAATATTAAGCTTCATCTATGGCTAAGCGAGCTTATTCAACTCATTGAAAGTGG
TTATGCTTTTTCACAATCATTAGAACGGCTCAATAAATTTATCGCTAACCAAGAAATTCAACTAATTAAAATGGGCGAGC
AGAGCGGAAAACTTGGTTTGATTTTAACCAACTTAGCACAGAGCAGAGTTAAATCAGATAAACTGGCTAAAAAAGTCAAG
AAAATCCTGTTTTACCCTACAATTGTACTGTTTATCTCGCTATTTCTTTCTATCGGGCTTTTAGTATTTATCGTGCCACA
ATTTGCCGAGCTTTATGGTACAAAAGCACAAGCTTTACCACTGATTACCGACATTTTATTTTCTCTTTCTCGATGTTTGA
TTGAGCAGAAAAACCTTTTATTCACTTTATTATTACTAGCGGTCATTTTTTTCTTATTTTTTGCAAAAAGAGGGAATTGG
GGGACAAAATTGAAACTTAGGTTATTGTCTAAACTCCCTATTTTTAGGCAAATTATAGAACAAGCACGAATAGTCTTTTT
TAGCCAAAATATTGCATTAATGTTGAATGCTCATATTCCGTTAGATGTCGCATTAAAATCATTTTTATCCGAAAAAAGCG
ATGACCCTATATTACAAAAAGAGGTTGAGTTTATGCTTAATCTTTTGCAGCAGGGCTATAAATTTTCGCAAGGCATTAAC
CCAAATGTATTTGGCTTAGATATGCCACAAATGATTGAAATAGGCGAGCGGAGCGGCAATGTTGCTAAAATGTGTGAGCA
TATTAGCGAGATATACCAACAAAAACTGGATTATCAAATTGATATTCTCTCCCAGCTATTAGAACCAATGCTGATGTTAC
TAATGGGCGTGATTGTCGGCACGATTATTGTCGGGCTATACTTACCGATTTTTGATATGGGAAGTTTAGTGGAGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(63-186)

Type II secretion system (T2SS), protein F (T2SSF)

(267-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Glaesserella parasuis strain SC1401

56.359

100

0.568
  pilC Haemophilus influenzae Rd KW20

42.893

100

0.432
  pilC Haemophilus influenzae 86-028NP

41.895

100

0.422