Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   QMO40_RS06590 Genome accession   NZ_CP125805
Coordinates   1364711..1365199 (+) Length   162 a.a.
NCBI ID   WP_025236202.1    Uniprot ID   -
Organism   Mannheimia bovis strain 39324.S-11     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1359711..1370199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMO40_RS06565 (QMO40_06565) - 1360286..1361050 (-) 765 WP_283385678.1 TSUP family transporter -
  QMO40_RS06570 (QMO40_06570) proB 1361050..1362141 (-) 1092 WP_283385679.1 glutamate 5-kinase -
  QMO40_RS06575 (QMO40_06575) - 1362252..1362740 (+) 489 WP_283385680.1 dihydrofolate reductase -
  QMO40_RS06580 (QMO40_06580) - 1362866..1363096 (+) 231 WP_025236204.1 YgjV family protein -
  QMO40_RS06585 (QMO40_06585) radA 1363150..1364529 (-) 1380 WP_025236203.1 DNA repair protein RadA -
  QMO40_RS06590 (QMO40_06590) pilA 1364711..1365199 (+) 489 WP_025236202.1 prepilin peptidase-dependent pilin Machinery gene
  QMO40_RS06595 (QMO40_06595) pilB 1365220..1366611 (+) 1392 WP_283385681.1 GspE/PulE family protein Machinery gene
  QMO40_RS06600 (QMO40_06600) pilC 1366604..1367800 (+) 1197 WP_283385682.1 type II secretion system F family protein Machinery gene
  QMO40_RS06605 (QMO40_06605) - 1367804..1368460 (+) 657 WP_283385683.1 prepilin peptidase -
  QMO40_RS06610 (QMO40_06610) coaE 1368492..1369127 (+) 636 WP_283385684.1 dephospho-CoA kinase -
  QMO40_RS06615 (QMO40_06615) yacG 1369109..1369294 (+) 186 WP_283385685.1 DNA gyrase inhibitor YacG -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17386.78 Da        Isoelectric Point: 8.7727

>NTDB_id=832856 QMO40_RS06590 WP_025236202.1 1364711..1365199(+) (pilA) [Mannheimia bovis strain 39324.S-11]
MQKIVHFRPLYTRQLHKAFTLIELMIVIAIIAILATIAIPSYNSYTQKAALSELLRASASYKSDVELCIYNSNGLDNCSG
GTNGIQANKTSINETKYLNSITVNKGVITVTGKGSLDGYSYTLTPSIPKNNTTISWSTSCKGSDTSLFPAGFCNTASAAS
ND

Nucleotide


Download         Length: 489 bp        

>NTDB_id=832856 QMO40_RS06590 WP_025236202.1 1364711..1365199(+) (pilA) [Mannheimia bovis strain 39324.S-11]
ATGCAAAAAATTGTACATTTTCGACCGCTTTACACTCGTCAATTACACAAGGCGTTTACCTTAATTGAGTTGATGATCGT
GATTGCTATTATTGCCATTCTTGCAACCATTGCAATTCCGTCCTACAACTCTTATACGCAAAAAGCGGCGTTATCGGAGC
TGTTGCGGGCTTCGGCTTCTTATAAATCAGATGTTGAGCTGTGTATTTATAATAGTAATGGGCTGGATAATTGCTCCGGT
GGTACAAATGGTATTCAAGCCAATAAAACGAGTATTAATGAAACCAAATATCTTAATTCGATTACTGTGAATAAAGGCGT
GATTACTGTAACAGGGAAAGGCTCGCTTGATGGATATAGCTATACATTAACTCCTTCAATTCCAAAAAATAATACTACTA
TTAGTTGGTCTACAAGCTGTAAAGGGAGCGATACAAGCTTATTCCCTGCAGGCTTTTGTAATACCGCATCAGCTGCATCA
AACGACTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(16-38)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Glaesserella parasuis strain SC1401

65.806

95.679

0.63
  pilA Haemophilus influenzae 86-028NP

58.621

89.506

0.525
  pilA Haemophilus influenzae Rd KW20

55.405

91.358

0.506