Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OIPHN260_RS01575 Genome accession   NZ_AP023447
Coordinates   340148..340672 (+) Length   174 a.a.
NCBI ID   WP_008503384.1    Uniprot ID   A0A156LWB5
Organism   Enterobacter roggenkampii strain OIPH-N260     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 335148..345672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIPHN260_RS01555 (OIPHN260_03060) aphA 335472..336185 (+) 714 WP_181519095.1 acid phosphatase AphA -
  OIPHN260_RS01560 (OIPHN260_03070) - 336299..336715 (+) 417 WP_045417704.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  OIPHN260_RS01565 (OIPHN260_03080) - 336718..337071 (+) 354 WP_008503382.1 MmcQ/YjbR family DNA-binding protein -
  OIPHN260_RS01570 (OIPHN260_03090) uvrA 337075..339897 (-) 2823 WP_047745038.1 excinuclease ABC subunit UvrA -
  OIPHN260_RS01575 (OIPHN260_03100) ssb 340148..340672 (+) 525 WP_008503384.1 single-stranded DNA-binding protein SSB1 Machinery gene
  OIPHN260_RS01580 (OIPHN260_03110) - 340735..341016 (-) 282 WP_008503385.1 YjcB family protein -
  OIPHN260_RS01585 (OIPHN260_03120) - 341653..341901 (+) 249 Protein_311 CSS-motif domain-containing protein -
  OIPHN260_RS01590 (OIPHN260_03140) - 341958..342928 (-) 971 Protein_312 IS5 family transposase -
  OIPHN260_RS01595 (OIPHN260_03150) - 342961..344286 (+) 1326 Protein_313 EAL domain-containing protein -
  OIPHN260_RS01600 (OIPHN260_03160) soxS 344293..344619 (-) 327 WP_008503387.1 superoxide response transcriptional regulator SoxS -
  OIPHN260_RS01605 (OIPHN260_03170) soxR 344718..345176 (+) 459 WP_181519096.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18593.60 Da        Isoelectric Point: 5.2456

>NTDB_id=83267 OIPHN260_RS01575 WP_008503384.1 340148..340672(+) (ssb) [Enterobacter roggenkampii strain OIPH-N260]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=83267 OIPHN260_RS01575 WP_008503384.1 340148..340672(+) (ssb) [Enterobacter roggenkampii strain OIPH-N260]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCAGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGTGCTGAGAAGTACACCACTGAAGTCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCAGCAGGTGGCGGCCAGCAGCAGGGCGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGTGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGCAGTCTGCTCCGGCGCCG
TCTAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A156LWB5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.787
  ssb Glaesserella parasuis strain SC1401

57.377

100

0.603
  ssb Neisseria meningitidis MC58

47.191

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.368

Multiple sequence alignment