Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   NSMS1_RS17980 Genome accession   NZ_AP023441
Coordinates   4160450..4160815 (-) Length   121 a.a.
NCBI ID   WP_224086125.1    Uniprot ID   -
Organism   Nostoc sp. MS1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4155450..4165815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSMS1_RS17970 (NSMS1_35350) - 4157063..4159888 (-) 2826 WP_224086124.1 methyl-accepting chemotaxis protein -
  NSMS1_RS17975 (NSMS1_35360) - 4159906..4160436 (-) 531 WP_067774323.1 chemotaxis protein CheW -
  NSMS1_RS17980 (NSMS1_35370) pilH 4160450..4160815 (-) 366 WP_224086125.1 response regulator transcription factor Machinery gene
  NSMS1_RS17985 (NSMS1_35380) - 4161086..4162279 (-) 1194 WP_224086126.1 response regulator -
  NSMS1_RS17990 (NSMS1_35390) hmpF 4162667..4164433 (+) 1767 WP_224086127.1 pilus motility taxis protein HmpF -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13382.52 Da        Isoelectric Point: 4.7160

>NTDB_id=83255 NSMS1_RS17980 WP_224086125.1 4160450..4160815(-) (pilH) [Nostoc sp. MS1]
MSTVLIVEDSLAQREMITDLLKASGLTVTHATDGLEALEAIKDEPPDLVVLDIVMPKMNGYEVCRRLKSDPKTQNVPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=83255 NSMS1_RS17980 WP_224086125.1 4160450..4160815(-) (pilH) [Nostoc sp. MS1]
ATGAGTACAGTTCTGATTGTGGAAGACAGTCTTGCACAGAGGGAGATGATTACAGACCTCCTGAAGGCTAGCGGCTTAAC
AGTCACTCACGCAACCGACGGATTAGAAGCACTAGAGGCGATTAAAGACGAACCTCCTGATCTAGTCGTTTTAGATATTG
TCATGCCGAAAATGAACGGCTATGAAGTTTGTCGACGCTTGAAATCAGACCCGAAAACCCAAAATGTTCCTGTGGTGATG
TGTTCTTCCAAAGGGGAAGAATTTGACCGCTATTGGGGGATGAAACAAGGCGCGGATGCTTACATAGCAAAACCATTTCA
GCCTACTGAATTGGTAGGAACAGTCAAACAACTACTGCGAGGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

75.207

100

0.752
  micA Streptococcus pneumoniae Cp1015

40

99.174

0.397
  vicR Streptococcus mutans UA159

39.167

99.174

0.388
  pilG Acinetobacter baumannii strain A118

39.474

94.215

0.372
  pilL-C Synechocystis sp. PCC 6803

37.19

100

0.372

Multiple sequence alignment