Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   QLH32_RS10020 Genome accession   NZ_CP125669
Coordinates   2123225..2124364 (+) Length   379 a.a.
NCBI ID   WP_283266111.1    Uniprot ID   -
Organism   Acinetobacter sp. KCTC 92772     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 2118225..2129364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLH32_RS10000 (QLH32_10000) - 2118788..2120875 (-) 2088 WP_283269316.1 TonB-dependent copper receptor -
  QLH32_RS10005 (QLH32_10005) - 2120951..2121385 (-) 435 WP_283266109.1 DUF2946 family protein -
  QLH32_RS10010 (QLH32_10010) def 2121406..2121936 (-) 531 WP_267981776.1 peptide deformylase -
  QLH32_RS10015 (QLH32_10015) tsaP 2122057..2123211 (+) 1155 WP_283266110.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  QLH32_RS10020 (QLH32_10020) dprA 2123225..2124364 (+) 1140 WP_283266111.1 DNA-processing protein DprA Machinery gene
  QLH32_RS10025 (QLH32_10025) - 2124401..2124970 (+) 570 WP_283266112.1 Sua5/YciO/YrdC/YwlC family protein -
  QLH32_RS10030 (QLH32_10030) - 2125379..2126299 (-) 921 WP_283266113.1 DMT family transporter -
  QLH32_RS10035 (QLH32_10035) - 2126405..2127049 (-) 645 WP_283266114.1 TetR/AcrR family transcriptional regulator -
  QLH32_RS10040 (QLH32_10040) - 2127198..2128418 (+) 1221 WP_283266115.1 MFS transporter -
  QLH32_RS10045 (QLH32_10045) - 2128432..2129205 (+) 774 WP_283266116.1 helix-turn-helix transcriptional regulator -

Sequence


Protein


Download         Length: 379 a.a.        Molecular weight: 42169.00 Da        Isoelectric Point: 6.6657

>NTDB_id=832345 QLH32_RS10020 WP_283266111.1 2123225..2124364(+) (dprA) [Acinetobacter sp. KCTC 92772]
MLDQLSPQHYATVLVWYLVQHSLSSFQKILHHFGSCEQATQPNRFTEWQQLGLHASHLKRLQEFQTAQGQQQFAQIVQLI
QKHSDFILTPDDIGYPTQLLPYSDHPPILFGQGQASALLQPQIAVVGSRKPSPHGRQMAYDFGYYLSEKGFYISSGLAHG
IDEAAHRGGLAHQRTIAVMGTGLDTIYPAQHKQLAEEIRQSGAIVTEFLPATLPLAAFFPRRNRIVSGLSLGVLVVEAAL
KSGSITTANAAANQGKMVFAIPGHIYSEHHQGCHQLIREGATLVDHPEQIIEDLALPTQWQAQQQRVEEPKETAPPPPSL
PTHLIELYQILDWVGQDLDQLAQRYSASIADLTAQLMELELLGLCIQQGGRYLRCRPMH

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=832345 QLH32_RS10020 WP_283266111.1 2123225..2124364(+) (dprA) [Acinetobacter sp. KCTC 92772]
ATGTTGGATCAATTATCACCTCAGCACTACGCCACTGTGTTGGTGTGGTATTTGGTTCAACATTCCCTCTCCAGTTTTCA
AAAAATTCTTCATCACTTTGGCAGTTGTGAACAGGCAACTCAACCCAACCGCTTTACAGAATGGCAGCAACTTGGCCTAC
ATGCCAGTCATTTAAAACGTTTGCAGGAATTCCAGACTGCACAGGGACAGCAGCAGTTTGCACAGATCGTTCAACTCATT
CAAAAACACAGTGACTTCATCTTAACGCCTGACGATATTGGCTATCCCACCCAACTATTGCCCTATTCAGACCACCCACC
GATTTTATTTGGACAGGGACAGGCATCGGCACTGCTGCAACCCCAAATTGCTGTAGTTGGCAGTCGCAAGCCTAGCCCCC
ATGGACGGCAAATGGCCTATGACTTTGGCTATTATTTAAGTGAAAAAGGCTTTTATATCAGCAGTGGTTTGGCACATGGC
ATTGATGAGGCAGCACATCGTGGTGGCTTGGCCCATCAGCGAACCATTGCGGTGATGGGCACAGGACTGGATACCATTTA
TCCTGCCCAGCATAAACAATTAGCCGAAGAAATTCGTCAATCAGGCGCAATTGTGACTGAGTTCTTGCCCGCCACCCTGC
CTTTAGCCGCGTTTTTTCCACGGCGTAACCGTATTGTCAGCGGCTTAAGCCTTGGCGTGTTGGTGGTGGAGGCGGCATTA
AAAAGCGGTTCCATCACCACAGCAAATGCAGCGGCAAATCAGGGCAAAATGGTCTTCGCCATTCCTGGACACATTTACAG
CGAGCATCATCAAGGTTGCCATCAACTGATTCGGGAGGGCGCAACCCTGGTTGACCATCCTGAACAGATCATTGAAGACC
TGGCTTTACCAACCCAATGGCAAGCCCAGCAGCAACGTGTTGAAGAACCCAAAGAAACAGCACCTCCACCACCCAGCCTG
CCTACGCACCTGATCGAACTCTACCAGATACTGGACTGGGTTGGACAAGACCTCGACCAACTTGCGCAACGCTATTCAGC
ATCAATTGCTGATCTCACCGCCCAGTTAATGGAACTGGAATTGCTTGGTTTATGTATTCAGCAAGGTGGACGCTATTTAC
GTTGCCGCCCAATGCATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii D1279779

72.944

99.472

0.726

  dprA Acinetobacter baumannii strain A118

72.679

99.472

0.723

  dprA Acinetobacter baylyi ADP1

69.211

100

0.694

  dprA Vibrio cholerae strain A1552

41.226

94.723

0.391