Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   QLH32_RS10015 Genome accession   NZ_CP125669
Coordinates   2122057..2123211 (+) Length   384 a.a.
NCBI ID   WP_283266110.1    Uniprot ID   -
Organism   Acinetobacter sp. KCTC 92772     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2117057..2128211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLH32_RS09995 (QLH32_09995) - 2117963..2118742 (+) 780 WP_283266108.1 sulfite exporter TauE/SafE family protein -
  QLH32_RS10000 (QLH32_10000) - 2118788..2120875 (-) 2088 WP_283269316.1 TonB-dependent copper receptor -
  QLH32_RS10005 (QLH32_10005) - 2120951..2121385 (-) 435 WP_283266109.1 DUF2946 family protein -
  QLH32_RS10010 (QLH32_10010) def 2121406..2121936 (-) 531 WP_267981776.1 peptide deformylase -
  QLH32_RS10015 (QLH32_10015) tsaP 2122057..2123211 (+) 1155 WP_283266110.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  QLH32_RS10020 (QLH32_10020) dprA 2123225..2124364 (+) 1140 WP_283266111.1 DNA-processing protein DprA Machinery gene
  QLH32_RS10025 (QLH32_10025) - 2124401..2124970 (+) 570 WP_283266112.1 Sua5/YciO/YrdC/YwlC family protein -
  QLH32_RS10030 (QLH32_10030) - 2125379..2126299 (-) 921 WP_283266113.1 DMT family transporter -
  QLH32_RS10035 (QLH32_10035) - 2126405..2127049 (-) 645 WP_283266114.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 41775.87 Da        Isoelectric Point: 9.2703

>NTDB_id=832344 QLH32_RS10015 WP_283266110.1 2122057..2123211(+) (tsaP) [Acinetobacter sp. KCTC 92772]
MKKVLNGIQSFHALGLKKQLIAAAICAGLGMSINLTHAASPNVSPPSVKAGAPHVYVVKKGDTLWDISGKFLSKPWRWPE
IWASNKHVKNPHWIYPGDKLLLCSLNGKPLIGKDEGDGCDGIIRRYTGNTASTLRPQVRIEALNNSVPVIPLAHIQQWLE
RTSVLPADAIANTPYILGTADNRVLAGKGQSVYVRGQGLENGQRYGVFREGEPYVVLDEKGKKQVLGLELTQVASGVAIR
NENDITTVELTDSYNGEVRRGDRVMAEQDAMLPTLFYPTDAGQVKDGGKIIRVMGSIGTAAKNGVVTVDRGTADGIEIGQ
VFSTYQDGETVRDPKTKETVKLPGQYVGSVMIFKSFDRISYAYVLESELPIKIGSNIKPPRLDD

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=832344 QLH32_RS10015 WP_283266110.1 2122057..2123211(+) (tsaP) [Acinetobacter sp. KCTC 92772]
ATGAAAAAGGTTTTAAACGGCATACAATCATTTCATGCCTTGGGGTTAAAAAAACAACTGATTGCCGCTGCAATTTGTGC
TGGATTGGGCATGAGCATCAACCTGACCCATGCAGCAAGCCCGAATGTCAGCCCACCGTCCGTGAAAGCAGGCGCACCGC
ATGTCTATGTGGTGAAAAAAGGCGATACGCTTTGGGACATTTCAGGCAAGTTTTTAAGCAAGCCGTGGCGCTGGCCTGAA
ATCTGGGCAAGCAACAAGCACGTTAAAAACCCACACTGGATTTATCCAGGTGACAAACTGCTACTCTGTAGCCTGAACGG
TAAACCTTTAATTGGTAAGGATGAGGGTGATGGCTGTGATGGCATTATCCGCCGCTATACAGGCAACACCGCATCAACCT
TGCGCCCACAGGTGCGCATTGAGGCGTTGAACAACAGCGTTCCTGTCATTCCATTGGCCCATATCCAGCAATGGCTGGAA
CGCACCTCGGTACTTCCAGCCGATGCGATTGCCAACACACCGTATATTCTGGGTACAGCAGACAACCGTGTTCTTGCAGG
CAAGGGCCAGAGCGTTTATGTCCGTGGTCAGGGTCTTGAAAATGGTCAACGCTATGGTGTGTTCCGTGAGGGTGAACCAT
ACGTGGTGCTGGATGAGAAAGGCAAGAAACAGGTGCTTGGCCTTGAGTTGACCCAGGTGGCTTCAGGTGTCGCCATTCGC
AACGAAAATGACATCACCACGGTTGAACTGACCGACAGCTACAATGGTGAAGTCCGTCGTGGCGACCGCGTCATGGCTGA
ACAGGATGCCATGCTGCCTACCCTGTTCTATCCAACCGATGCAGGTCAGGTCAAAGACGGTGGCAAGATCATTCGTGTCA
TGGGTTCAATTGGAACTGCTGCGAAAAACGGTGTGGTGACCGTAGACCGTGGTACGGCTGATGGTATTGAAATCGGACAG
GTTTTCAGCACCTATCAGGATGGTGAAACTGTTCGTGACCCTAAAACCAAGGAAACGGTTAAACTTCCTGGACAATATGT
GGGCAGCGTCATGATCTTTAAGAGCTTTGACCGTATCAGCTATGCCTATGTGCTGGAAAGTGAGCTACCAATCAAGATTG
GTTCAAACATCAAGCCACCTCGTCTTGACGACTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(56-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

71.688

100

0.719