Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QLH32_RS09735 Genome accession   NZ_CP125669
Coordinates   2054385..2055872 (+) Length   495 a.a.
NCBI ID   WP_283266073.1    Uniprot ID   -
Organism   Acinetobacter sp. KCTC 92772     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2049385..2060872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLH32_RS09710 (QLH32_09710) ribD 2050260..2051345 (-) 1086 WP_283266071.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  QLH32_RS09715 (QLH32_09715) nrdR 2051358..2051822 (-) 465 WP_267981597.1 transcriptional regulator NrdR -
  QLH32_RS09720 (QLH32_09720) - 2051990..2053405 (-) 1416 WP_283266072.1 ammonium transporter -
  QLH32_RS09725 (QLH32_09725) glnK 2053474..2053812 (-) 339 WP_000780326.1 P-II family nitrogen regulator -
  QLH32_RS09730 (QLH32_09730) - 2054088..2054315 (+) 228 WP_004674247.1 accessory factor UbiK family protein -
  QLH32_RS09735 (QLH32_09735) comM 2054385..2055872 (+) 1488 WP_283266073.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QLH32_RS09740 (QLH32_09740) - 2055925..2056689 (-) 765 WP_267981600.1 TorF family putative porin -
  QLH32_RS09745 (QLH32_09745) - 2057144..2057911 (-) 768 WP_283266074.1 TorF family putative porin -
  QLH32_RS09750 (QLH32_09750) - 2058647..2059933 (+) 1287 WP_283266075.1 OprD family outer membrane porin -
  QLH32_RS09755 (QLH32_09755) ppa 2060036..2060563 (-) 528 WP_005060879.1 inorganic diphosphatase -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54053.81 Da        Isoelectric Point: 7.2999

>NTDB_id=832343 QLH32_RS09735 WP_283266073.1 2054385..2055872(+) (comM) [Acinetobacter sp. KCTC 92772]
MSFAKIYTRGLLGLHAPQIEVEVHISSGLPSLTIVGLPEAAVRESKDRVRSAIINSGFLFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPENCTDGFEFIGELALDGHLRPVSGTLTIAMACQQAQHRLLLPTANLDEASQLPEFEVYAANHL
QEVCAHFLGSSPLKAAPQKSTAASSRYPFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLNA
QENLEVASIYSVANAQHTFGQRPFRAPHHTASAIALVGGGSQPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRAARQMTFPANFQFIAAMNPCPCGYAFNQDSRCQCSPESIQRYQNRISGPLLDRIDLHIDVPPLQAQELQERTPSE
NSETVRQRVMKAYQQQIQRQQCLNQALSPTLLEQYACLDDSSSKIIEMAQQRLNLSARAYHRVLRVARTIADLAESEIIS
SSHLTEALSYRGNSA

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=832343 QLH32_RS09735 WP_283266073.1 2054385..2055872(+) (comM) [Acinetobacter sp. KCTC 92772]
ATGTCTTTTGCCAAAATTTATACGAGGGGCTTACTGGGGCTACATGCCCCTCAGATCGAAGTGGAAGTCCATATCAGCTC
AGGCCTACCCTCCTTGACCATTGTGGGGTTGCCTGAAGCCGCAGTCCGTGAAAGCAAGGATCGTGTGCGCTCTGCGATTA
TCAACAGTGGTTTTCTTTTTCCAACCAAGCGCTTAACCATTAATCTGGCACCCGCAGACCTGCCCAAGGATGGTTCCCGT
TTAGACTTGCCGATTGCACTGGGTATTCTGATCGCCTCTGGACAGTTACCCGAAAACTGTACCGATGGTTTTGAGTTTAT
TGGTGAACTTGCACTGGATGGGCATTTACGCCCTGTTTCAGGGACATTGACCATTGCCATGGCTTGCCAGCAGGCACAAC
ATCGCTTGTTACTGCCAACCGCCAATCTTGATGAAGCCAGCCAACTACCTGAATTTGAAGTGTATGCAGCCAATCATTTA
CAGGAAGTGTGTGCACATTTTCTGGGCAGTTCGCCACTAAAAGCTGCACCACAAAAATCAACTGCGGCATCCTCACGCTA
TCCATTTGACCTTGCCGATGTCAAAGGACAGTTACGCCCCCGCCGTGCGCTGGAAATTGCCGCGGCAGGTGGACACTCAT
TATTATTTAAGGGGCCGCCAGGCACAGGTAAAACCCTGCTCGCCTCGCGTTTACCCTCTATTTTGCCGCCATTAAATGCA
CAGGAAAATTTAGAGGTTGCCAGCATCTACTCAGTTGCAAATGCTCAGCACACTTTCGGGCAGAGGCCGTTTCGCGCACC
GCACCATACTGCTTCGGCAATTGCATTGGTTGGGGGTGGCTCACAACCCAAACCAGGTGAAATTACCCTGGCCCATTTAG
GTGTGTTATTTTTGGATGAATTGCCTGAGTTTGACCGAAAAGTCCTTGAAGTTTTACGCCAGCCACTTGAGTCTAAAGAA
ATTGTCATTTCTCGCGCCGCACGGCAAATGACCTTTCCAGCAAACTTCCAGTTTATTGCCGCGATGAATCCCTGTCCCTG
TGGCTATGCCTTTAATCAGGACAGTCGCTGCCAATGTTCACCTGAAAGTATCCAGCGCTATCAAAACCGTATTTCTGGCC
CATTGCTGGATCGTATTGACCTGCATATTGATGTACCCCCTTTGCAGGCACAGGAATTACAGGAACGGACACCGAGTGAA
AACTCTGAAACGGTGCGTCAGCGGGTGATGAAAGCCTATCAACAGCAAATTCAGCGACAGCAATGTTTAAATCAGGCACT
TTCACCCACTTTGCTGGAACAATATGCCTGTCTGGATGACAGCTCAAGCAAAATTATTGAGATGGCCCAACAACGCCTGA
ACCTTTCAGCCCGTGCCTACCATCGGGTGTTAAGGGTGGCACGAACCATTGCGGATTTGGCAGAAAGTGAAATCATTTCA
AGTTCGCACTTAACTGAAGCACTGTCTTATCGGGGTAATTCAGCCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.406

100

0.517
  comM Glaesserella parasuis strain SC1401

50.501

100

0.509
  comM Vibrio campbellii strain DS40M4

50.602

100

0.509
  comM Haemophilus influenzae Rd KW20

50.1

100

0.505
  comM Legionella pneumophila str. Paris

49.197

100

0.495
  comM Legionella pneumophila strain ERS1305867

49.197

100

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.215

100

0.469