Detailed information NTG0832299

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: U0449_RS03955
• Genome accession: NZ_CP139862
• Coordinates: 794433..795431 (-)
• Length: 332 a.a.
• NCBI ID: WP_001810210.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain 05H0020-2
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 789433..800431

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
U0449_RS03935	eeP	790798..792057 (-)	1260	WP_000900660.1	RIP metalloprotease RseP	Regulator
U0449_RS03940	-	792079..792882 (-)	804	WP_000189866.1	phosphatidate cytidylyltransferase	-
U0449_RS03945	-	792891..793649 (-)	759	WP_000466719.1	isoprenyl transferase	-
U0449_RS03950	-	793880..794452 (-)	573	WP_001098897.1	nucleotidyltransferase family protein	-
U0449_RS03955	ruvB	794433..795431 (-)	999	WP_001810210.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
U0449_RS03960	-	795565..795656 (+)	92	Protein_787	type I toxin-antitoxin system Fst family toxin	-
U0449_RS03965	-	796470..796886 (-)	417	WP_000628392.1	GNAT family N-acetyltransferase	-
U0449_RS03970	-	796898..797593 (-)	696	WP_001144912.1	GNAT family N-acetyltransferase	-
U0449_RS03975	leuS	797787..800288 (-)	2502	WP_000011766.1	leucine--tRNA ligase	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37258.70 Da
• Isoelectric Point: 4.5053

>NTDB_id=832299 U0449_RS03955 WP_001810210.1 794433..795431(-) (ruvB) [Streptococcus pneumoniae strain 05H0020-2]
MGRILDNEIMGDEELVERTLRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPVIEKAGDLVAILNELEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAGEGSRSVHLELPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEMEITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVID
DIITDKALTMLDVDHEGLDYVDQKILRTMIEMYSGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATAK
AYEHLGYEYSEK

Nucleotide

• Length: 999 bp

>NTDB_id=832299 U0449_RS03955 WP_001810210.1 794433..795431(-) (ruvB) [Streptococcus pneumoniae strain 05H0020-2]
ATGGGTAGAATTTTAGATAATGAGATAATGGGGGATGAGGAGTTAGTAGAACGCACGCTCCGTCCTCAGTATTTACGTGA
ATATATCGGACAGGATAAGGTCAAGGACCAGCTACAAATCTTTATTGAAGCTGCAAAAATGCGGGATGAAGCGCTGGATC
ATGTGCTCTTATTTGGGCCTCCAGGTCTCGGGAAAACGACCATGGCCTTTGTTATTGCCAATGAACTGGGAGTCAATCTC
AAGCAAACGTCGGGTCCAGTCATTGAAAAAGCCGGAGATCTGGTAGCTATTTTGAATGAGTTAGAGCCTGGGGATGTCCT
TTTTATTGATGAGATCCATCGTTTGCCAATGTCAGTGGAAGAGGTGCTTTATAGTGCTATGGAGGACTTCTACATAGATA
TTATGATTGGGGCTGGTGAGGGTAGTCGTAGTGTTCATTTGGAGTTACCACCTTTTACCTTGATTGGTGCGACGACTCGG
GCTGGTATGCTCTCCAATCCGCTACGGGCACGTTTTGGGATTACAGGTCATATGGAGTATTATGCCCATGCTGACTTGAC
AGAAATTGTCGAGCGGACGGCAGATATTTTTGAGATGGAAATCACTCATGAGGCAGCATCTGAGTTGGCCCTACGTAGTC
GTGGGACCCCTCGTATTGCCAATCGTCTCCTCAAGCGCGTGCGCGATTTTGCCCAGATAATGGGGAATGGGGTAATTGAT
GATATTATTACCGATAAGGCTTTGACTATGCTGGATGTTGACCATGAAGGTTTGGACTATGTGGATCAAAAAATCCTTCG
TACCATGATTGAGATGTACAGTGGAGGACCTGTTGGTCTAGGAACTCTTTCTGTGAATATCGCCGAAGAGCGTGAGACAG
TTGAAGATATGTATGAGCCTTACTTGATTCAAAAAGGTTTTATCATGCGGACACGGTCTGGACGGGTGGCGACTGCTAAG
GCATATGAGCACTTAGGTTATGAATACAGTGAAAAATAA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (181-254)

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae R6	99.699	100	0.997
ruvB	Streptococcus pneumoniae D39	99.699	100	0.997
ruvB	Streptococcus pneumoniae TIGR4	98.795	100	0.988
ruvB	Bacillus subtilis subsp. subtilis str. 168	60.429	98.193	0.593
ruvB	Helicobacter pylori 26695	50.774	97.289	0.494
ruvB	Synechocystis sp. PCC 6803	49.84	94.277	0.47