Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QMA40_RS09735 Genome accession   NZ_CP125661
Coordinates   1871421..1871708 (+) Length   95 a.a.
NCBI ID   WP_000648325.1    Uniprot ID   A0A9W5QIM5
Organism   Bacillus thuringiensis strain BV5     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1866421..1876708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMA40_RS09715 (QMA40_09675) - 1867595..1867792 (+) 198 WP_001048102.1 DUF4083 domain-containing protein -
  QMA40_RS09720 (QMA40_09680) - 1867824..1868285 (+) 462 WP_000024999.1 NUDIX hydrolase -
  QMA40_RS09725 (QMA40_09685) nadE 1868337..1869155 (-) 819 WP_000174891.1 ammonia-dependent NAD(+) synthetase -
  QMA40_RS09730 (QMA40_09690) - 1869425..1871305 (+) 1881 WP_097918945.1 ABC transporter permease -
  QMA40_RS09735 (QMA40_09695) abrB 1871421..1871708 (+) 288 WP_000648325.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  QMA40_RS09740 (QMA40_09700) - 1871985..1872932 (+) 948 WP_000099756.1 serine protease -
  QMA40_RS09745 (QMA40_09705) - 1872990..1873319 (+) 330 Protein_1829 MFS transporter permease -
  QMA40_RS09750 - 1873368..1873574 (+) 207 WP_001101740.1 hypothetical protein -
  QMA40_RS09755 (QMA40_09710) - 1873614..1873838 (-) 225 WP_000162602.1 hypothetical protein -
  QMA40_RS09760 (QMA40_09715) - 1873923..1874270 (-) 348 WP_000426317.1 DUF4257 domain-containing protein -
  QMA40_RS09765 (QMA40_09720) - 1874467..1875009 (+) 543 WP_410491568.1 DinB family protein -
  QMA40_RS09770 (QMA40_09725) rsgA 1875177..1876229 (+) 1053 WP_001073075.1 ribosome small subunit-dependent GTPase A -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10529.28 Da        Isoelectric Point: 5.1367

>NTDB_id=832298 QMA40_RS09735 WP_000648325.1 1871421..1871708(+) (abrB) [Bacillus thuringiensis strain BV5]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEADKIILQKYQPYNACQITGDVSGQNITLANGNITVGIEGAE
YLVKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=832298 QMA40_RS09735 WP_000648325.1 1871421..1871708(+) (abrB) [Bacillus thuringiensis strain BV5]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATCCCTAAAGAATTACGCGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTTGTAGAAGCAGATAAAATCATTTTACAAAAATATCAACCTTACAATGCTT
GCCAAATCACAGGTGATGTTTCAGGGCAGAATATTACATTAGCAAATGGAAATATTACAGTTGGCATAGAGGGAGCGGAA
TATTTAGTAAAAGAAATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.556

94.737

0.526