Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QFW87_RS28655 Genome accession   NZ_CP125618
Coordinates   6224413..6225906 (+) Length   497 a.a.
NCBI ID   WP_283189414.1    Uniprot ID   -
Organism   Pseudomonas sp. PMCC200344     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6219413..6230906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFW87_RS28630 - 6220327..6221559 (-) 1233 WP_283189409.1 ATP-grasp domain-containing protein -
  QFW87_RS28635 - 6221562..6222434 (-) 873 WP_283189410.1 iron-containing redox enzyme family protein -
  QFW87_RS28640 - 6222446..6222889 (-) 444 WP_283189411.1 DUF3291 domain-containing protein -
  QFW87_RS28645 - 6222889..6223347 (-) 459 WP_283189412.1 VOC family protein -
  QFW87_RS28650 - 6223370..6224119 (-) 750 WP_283189413.1 ArpA protein -
  QFW87_RS28655 comM 6224413..6225906 (+) 1494 WP_283189414.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QFW87_RS28660 - 6226018..6227994 (-) 1977 WP_283189415.1 methyl-accepting chemotaxis protein -
  QFW87_RS28665 - 6228179..6229099 (-) 921 WP_283189416.1 LysR substrate-binding domain-containing protein -
  QFW87_RS28670 - 6229259..6230656 (+) 1398 WP_283189417.1 NorM family multidrug efflux MATE transporter -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53219.38 Da        Isoelectric Point: 8.0523

>NTDB_id=831935 QFW87_RS28655 WP_283189414.1 6224413..6225906(+) (comM) [Pseudomonas sp. PMCC200344]
MSLSIVHSRAQIGVDAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPTLTLDDIECLGELALSGAVRAVRGVLPAALAARKAGRSLMVPRANAEEACLASGLKVFAVDHL
LEAVAHFNGHTPVEPYISNGLLYASKPYPDLNEVQGQISAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLAE
HEALEVAAIQSVTSCVPLSHWPQRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRAKDRVRFPARFQLVAAMNPCPCGYLGEPSGKCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPALKP
GDDTATAALLVADARERQHKRQGCANAFLDLPGLRRHCKLSTTDETWLETACERLTLSLRSAHRLLKVARTLADLEQVDA
ITREHLAEALQYRPSTQ

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=831935 QFW87_RS28655 WP_283189414.1 6224413..6225906(+) (comM) [Pseudomonas sp. PMCC200344]
ATGTCCCTCTCCATCGTCCACAGCCGCGCCCAGATTGGTGTGGATGCGCCTGCCGTTACCGTTGAAGTCCATCTGGCCAA
CGGATTGCCATCGCTGACGATGGTTGGTTTGCCGGAAGCGGCGGTGAAGGAAAGCAAGGACCGGGTGCGCAGTGCGATCA
TCAATTCGGGCCTGCAATTTCCGGCGCGGCGAATCACGTTGAATCTGGCCCCTGCGGATTTGCCAAAAGACGGCGGACGC
TTTGATCTGGCGATTGCCTTGGGCATTCTGTCAGCCAGCGTGCAGGTGCCGACGTTGACGCTCGATGACATCGAATGCCT
GGGAGAACTGGCATTGTCAGGCGCGGTGCGTGCCGTGCGGGGCGTGCTGCCGGCGGCACTGGCTGCGCGCAAGGCCGGGC
GTTCGCTGATGGTGCCGAGGGCGAACGCCGAGGAAGCCTGCCTCGCGTCCGGGCTGAAGGTATTTGCTGTCGATCACTTG
CTGGAAGCGGTCGCGCATTTCAATGGTCACACGCCGGTCGAGCCCTATATCTCCAATGGCTTGCTCTACGCCAGCAAACC
CTATCCCGACCTGAATGAAGTGCAGGGGCAAATCTCGGCCAAGCGTGCCTTGCTGATTGCCGCAGCTGGAGCGCATAACC
TGCTGTTCAGCGGACCGCCGGGCACGGGTAAAACACTCCTGGCGAGTCGTTTGCCTGGGTTGCTGCCTCCGTTGGCCGAA
CATGAGGCGCTGGAAGTTGCGGCCATTCAATCCGTCACCAGTTGCGTGCCGTTGAGCCATTGGCCACAGCGCCCGTTTCG
CCAGCCGCATCATTCGGCGTCGGGCCCGGCATTAGTGGGCGGTGGATCGAAACCACAACCTGGCGAAATCACCCTCGCCC
ATCACGGCGTTCTGTTTCTTGACGAACTTCCGGAGTTTGATCGCAAGGTGCTGGAGGTATTGAGAGAACCGCTGGAATCC
GGGCATATCGTGATTTCCCGCGCCAAGGATCGTGTGCGGTTTCCGGCGCGATTCCAGTTGGTTGCAGCCATGAATCCGTG
CCCCTGTGGGTATCTTGGCGAACCCAGTGGCAAATGCAGTTGTACACCGGACATGGTCCAGCGTTATCGCAACAAATTGT
CGGGGCCGCTGTTGGATCGCATCGACCTTCACCTGACCGTTGCCCGGGAAGCCACGGCGTTGAATCCTGCGCTCAAACCC
GGAGATGACACGGCAACCGCCGCGCTGCTGGTCGCCGACGCCAGGGAGCGCCAACACAAGCGCCAAGGCTGCGCAAATGC
CTTCCTTGATCTGCCGGGACTGCGCCGGCACTGCAAGTTATCCACCACCGACGAAACCTGGCTGGAAACTGCGTGTGAGC
GACTGACACTGTCGCTGAGGTCGGCGCATCGGCTGCTGAAGGTAGCGCGGACGCTGGCCGACCTTGAGCAAGTCGATGCC
ATTACCCGGGAACACCTCGCCGAAGCGTTGCAGTATCGACCATCGACTCAGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

54.747

99.598

0.545
  comM Vibrio cholerae strain A1552

54.545

99.598

0.543
  comM Haemophilus influenzae Rd KW20

53.106

100

0.533
  comM Glaesserella parasuis strain SC1401

52.8

100

0.531
  comM Legionella pneumophila str. Paris

50.201

100

0.503
  comM Legionella pneumophila strain ERS1305867

50.201

100

0.503
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.2

100

0.455