Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   L6418_RS03640 Genome accession   NZ_AP023423
Coordinates   743881..744339 (+) Length   152 a.a.
NCBI ID   WP_237248113.1    Uniprot ID   A0AAN1X9A8
Organism   Sideroxyarcus emersonii strain MIZ01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 738881..749339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6418_RS03630 (MIZ01_0737) - 741573..742394 (+) 822 WP_237248111.1 alpha/beta hydrolase -
  L6418_RS03635 (MIZ01_0738) - 742503..743879 (+) 1377 WP_237248112.1 MFS transporter -
  L6418_RS03640 (MIZ01_0739) ssb 743881..744339 (+) 459 WP_237248113.1 single-stranded DNA-binding protein Machinery gene
  L6418_RS03645 (MIZ01_0740) - 744600..745145 (+) 546 WP_237248114.1 hypothetical protein -
  L6418_RS03650 (MIZ01_0741) - 745192..746430 (+) 1239 WP_237248115.1 MFS transporter -
  L6418_RS03655 (MIZ01_0742) - 746465..747751 (-) 1287 WP_237248116.1 TRAP transporter large permease -
  L6418_RS03660 (MIZ01_0743) - 747748..748263 (-) 516 WP_237248117.1 TRAP transporter small permease -
  L6418_RS03665 (MIZ01_0744) dctP 748267..749268 (-) 1002 WP_237248118.1 TRAP transporter substrate-binding protein DctP -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 16944.93 Da        Isoelectric Point: 7.0197

>NTDB_id=83163 L6418_RS03640 WP_237248113.1 743881..744339(+) (ssb) [Sideroxyarcus emersonii strain MIZ01]
MSVNKVILVGRLGKDPETRYMTNGEAVTNVTLATSENWKDKSGEKQEKTEWHNLVFYRRLAEVAGEYLKKGSQIYVEGKI
QTRKWQDKETGKDRYTTEIIVNEMQMLGSKSGGGSFEVVENQSAAPARSAAAKPAASTGKSNFDNFDDDIPF

Nucleotide


Download         Length: 459 bp        

>NTDB_id=83163 L6418_RS03640 WP_237248113.1 743881..744339(+) (ssb) [Sideroxyarcus emersonii strain MIZ01]
ATGTCGGTGAACAAAGTGATCCTGGTGGGGCGTCTGGGTAAGGACCCGGAGACCCGTTATATGACCAATGGCGAGGCGGT
GACCAACGTCACGCTGGCGACTTCCGAGAACTGGAAGGACAAGAGCGGCGAGAAACAGGAAAAGACCGAGTGGCACAATC
TCGTGTTCTATCGCCGCCTGGCCGAAGTGGCGGGCGAATATCTGAAAAAGGGTTCGCAGATCTACGTCGAAGGCAAGATA
CAGACGCGCAAATGGCAGGATAAAGAGACGGGCAAGGATCGCTATACCACCGAGATCATCGTCAACGAAATGCAGATGCT
GGGCAGCAAGTCCGGCGGCGGCAGCTTCGAGGTGGTGGAGAATCAGTCGGCCGCTCCGGCACGCAGTGCCGCCGCCAAAC
CCGCGGCCAGCACTGGCAAGAGCAATTTCGACAACTTCGATGACGATATCCCCTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

49.721

100

0.586
  ssb Vibrio cholerae strain A1552

47.977

100

0.546
  ssb Neisseria meningitidis MC58

46.857

100

0.539
  ssb Neisseria gonorrhoeae MS11

46.286

100

0.533

Multiple sequence alignment