Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QMK47_RS28610 Genome accession   NZ_CP125373
Coordinates   6393515..6395008 (+) Length   497 a.a.
NCBI ID   WP_320389618.1    Uniprot ID   -
Organism   Pseudomonas sp. P9_35     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6388515..6400008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK47_RS28585 (QMK47_28580) - 6388934..6389359 (-) 426 WP_214510093.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  QMK47_RS28590 (QMK47_28585) - 6389572..6390906 (-) 1335 WP_063323830.1 ammonium transporter -
  QMK47_RS28595 (QMK47_28590) glnK 6390940..6391278 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  QMK47_RS28600 (QMK47_28595) - 6391692..6391952 (+) 261 WP_060740084.1 accessory factor UbiK family protein -
  QMK47_RS28605 (QMK47_28600) - 6391971..6393248 (-) 1278 WP_320389617.1 HAMP domain-containing sensor histidine kinase -
  QMK47_RS28610 (QMK47_28605) comM 6393515..6395008 (+) 1494 WP_320389618.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QMK47_RS28615 (QMK47_28610) - 6395015..6396229 (-) 1215 WP_253470366.1 aldose 1-epimerase family protein -
  QMK47_RS28860 - 6396870..6397730 (-) 861 WP_413817787.1 methyl-accepting chemotaxis protein -
  QMK47_RS28865 - 6397773..6398846 (-) 1074 Protein_5652 Cache 3/Cache 2 fusion domain-containing protein -
  QMK47_RS28625 (QMK47_28620) - 6399034..6399954 (-) 921 WP_214510101.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53125.23 Da        Isoelectric Point: 7.9745

>NTDB_id=831497 QMK47_RS28610 WP_320389618.1 6393515..6395008(+) (comM) [Pseudomonas sp. P9_35]
MSLAIVHSRAQVGVEAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLNFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPTLTLDDVECLGELALSGAVRPVRGVLPAALAARKAGRMLVVPRANAEEACLASGLKVIAVDHL
LEAVAHFNGHTPVEPFVSNGLLSASKPYPDLNEVQGQAGAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLAE
SEALEVAAIQSVASCIPLSHWPQRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRRVLEVLREPLES
GHIVVSRARDRVRFPARFQLVAAMNPCPCGYLGEPSGRCCCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPKRES
GDDTATVAEQVAEARERQHKRQGCANAFLDLPGLRQHCKLSTTDETWLETACERLTLSLRAAHRLLKVARTLADLEQAGC
IRREHLAEALQYRPTTP

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=831497 QMK47_RS28610 WP_320389618.1 6393515..6395008(+) (comM) [Pseudomonas sp. P9_35]
ATGTCGCTTGCCATCGTCCACAGCCGCGCCCAAGTAGGGGTCGAGGCTCCTGCCGTTACCGTTGAAGTCCACCTGGCCAA
TGGCTTGCCGTCACTGACGATGGTTGGTCTGCCGGAGGCGGCGGTGAAGGAAAGCAAGGATCGGGTGCGCAGCGCGATCA
TCAATTCGGGGCTGAACTTCCCGGCACGACGCATCACCTTGAACCTGGCGCCGGCAGACCTGCCAAAGGACGGCGGACGC
TTCGACCTGGCCATTGCCTTGGGGATCCTGTCGGCCAGCGTGCAGGTGCCAACCCTGACGCTGGACGACGTGGAATGCCT
CGGTGAACTGGCCTTGTCCGGCGCGGTACGACCGGTGCGCGGGGTATTGCCCGCGGCGCTGGCGGCGCGCAAGGCCGGGC
GCATGCTGGTGGTGCCGCGGGCCAATGCCGAGGAGGCCTGCCTGGCCTCGGGGCTGAAGGTGATCGCCGTGGACCATCTG
CTCGAAGCGGTGGCCCACTTCAATGGGCACACACCGGTCGAGCCTTTCGTTTCCAATGGGCTGCTCTCGGCCAGCAAGCC
CTACCCCGACCTGAACGAAGTTCAAGGCCAGGCCGGGGCCAAGCGGGCCTTGCTGATTGCTGCAGCGGGGGCTCATAACC
TGTTGTTCAGCGGGCCACCGGGCACCGGCAAGACATTGCTCGCGAGCCGTCTGCCGGGGTTGTTGCCCCCCTTGGCCGAG
AGTGAGGCGCTGGAAGTCGCGGCCATCCAGTCGGTGGCCAGTTGCATACCGTTGAGCCACTGGCCGCAGCGCCCGTTTCG
CCAGCCACACCACTCGGCTTCCGGCCCGGCGCTGGTGGGTGGCGGGTCAAAACCGCAGCCAGGGGAAATCACCCTCGCCC
ATCATGGCGTGCTGTTTCTGGATGAATTGCCGGAGTTCGACCGCCGGGTGCTGGAGGTCCTGAGAGAGCCGCTGGAATCT
GGGCACATCGTGGTTTCTCGCGCCCGCGACCGAGTACGCTTCCCGGCGCGTTTCCAGTTGGTGGCGGCGATGAACCCCTG
CCCCTGTGGATATCTTGGCGAACCCAGCGGCCGTTGCTGCTGTACACCGGACATGGTGCAGCGTTACCGCAACAAACTCT
CCGGGCCGCTGCTGGACCGCATCGACCTGCACCTGACCGTTGCCCGGGAAGCCACGGCGTTGAACCCCAAGCGCGAATCC
GGAGACGATACCGCCACGGTCGCCGAGCAGGTGGCCGAAGCCCGGGAACGTCAGCACAAGCGCCAAGGCTGCGCCAACGC
CTTCCTCGATCTGCCGGGGTTGCGTCAGCATTGCAAGTTATCCACAACCGATGAAACCTGGCTGGAAACCGCCTGCGAAC
GGCTGACCCTGTCGTTGCGCGCCGCCCACCGCTTGCTCAAGGTCGCCCGGACGCTGGCGGATCTGGAGCAAGCGGGATGT
ATCCGCCGCGAGCATCTGGCCGAAGCATTGCAGTATCGGCCAACTACCCCCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.354

99.598

0.551
  comM Vibrio cholerae strain A1552

55.152

99.598

0.549
  comM Haemophilus influenzae Rd KW20

53.307

100

0.535
  comM Glaesserella parasuis strain SC1401

52.8

100

0.531
  comM Legionella pneumophila str. Paris

50

99.799

0.499
  comM Legionella pneumophila strain ERS1305867

50

99.799

0.499
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.833

100

0.465