Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | QMK46_RS24625 | Genome accession | NZ_CP125372 |
| Coordinates | 5560210..5561082 (+) | Length | 290 a.a. |
| NCBI ID | WP_320413510.1 | Uniprot ID | - |
| Organism | Pseudomonas germanica strain P9_87 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5555210..5566082
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QMK46_RS24600 (QMK46_24595) | - | 5555395..5555691 (+) | 297 | WP_093434887.1 | DUF2845 domain-containing protein | - |
| QMK46_RS24605 (QMK46_24600) | - | 5555979..5556335 (-) | 357 | WP_047600285.1 | BON domain-containing protein | - |
| QMK46_RS24610 (QMK46_24605) | - | 5556630..5557061 (-) | 432 | WP_095048680.1 | pilin | - |
| QMK46_RS24615 (QMK46_24610) | pilB | 5557288..5558988 (+) | 1701 | WP_095048681.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| QMK46_RS24620 (QMK46_24615) | pilC | 5558991..5560208 (+) | 1218 | WP_093434875.1 | type II secretion system F family protein | Machinery gene |
| QMK46_RS24625 (QMK46_24620) | pilD | 5560210..5561082 (+) | 873 | WP_320413510.1 | A24 family peptidase | Machinery gene |
| QMK46_RS24630 (QMK46_24625) | coaE | 5561079..5561702 (+) | 624 | WP_320413511.1 | dephospho-CoA kinase | - |
| QMK46_RS24635 (QMK46_24630) | yacG | 5561699..5561899 (+) | 201 | WP_095048684.1 | DNA gyrase inhibitor YacG | - |
| QMK46_RS24640 (QMK46_24635) | - | 5561906..5562121 (-) | 216 | WP_007909901.1 | hypothetical protein | - |
| QMK46_RS24645 (QMK46_24640) | - | 5562187..5562876 (-) | 690 | WP_095048686.1 | energy-coupling factor ABC transporter permease | - |
| QMK46_RS24650 (QMK46_24645) | - | 5562873..5563340 (-) | 468 | WP_095048687.1 | FAD/FMN-containing dehydrogenase | - |
| QMK46_RS24655 (QMK46_24650) | - | 5563471..5564097 (+) | 627 | WP_007909887.1 | DUF1780 domain-containing protein | - |
| QMK46_RS24660 (QMK46_24655) | - | 5564094..5564621 (+) | 528 | WP_095048688.1 | MOSC domain-containing protein | - |
| QMK46_RS24665 (QMK46_24660) | - | 5564673..5564846 (+) | 174 | WP_007909875.1 | DUF3094 domain-containing protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 32193.44 Da Isoelectric Point: 7.7032
>NTDB_id=831456 QMK46_RS24625 WP_320413510.1 5560210..5561082(+) (pilD) [Pseudomonas germanica strain P9_87]
MPIDELFAVYPLAFVGTALLLGLVVGSFLNVLIWRLPKMLERDWRQQAHDVLGLPGEASQPVYNLMLPHSECPHCAHRIR
PWENVPLLSYLWLRGRCSACSAPISKRYPLTELACGLLSAFIAWHLGFGWPACLLIVLTWGLLAMSLIDTEHQLLPDVLV
LPLLWLGLIVNSFGLFVTLHDALWGAVAGYLALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AIIGVILLRLREQKTSTPIPFGPYLAIAGWIALLWGGQITAFYWQFVGLK
MPIDELFAVYPLAFVGTALLLGLVVGSFLNVLIWRLPKMLERDWRQQAHDVLGLPGEASQPVYNLMLPHSECPHCAHRIR
PWENVPLLSYLWLRGRCSACSAPISKRYPLTELACGLLSAFIAWHLGFGWPACLLIVLTWGLLAMSLIDTEHQLLPDVLV
LPLLWLGLIVNSFGLFVTLHDALWGAVAGYLALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AIIGVILLRLREQKTSTPIPFGPYLAIAGWIALLWGGQITAFYWQFVGLK
Nucleotide
Download Length: 873 bp
>NTDB_id=831456 QMK46_RS24625 WP_320413510.1 5560210..5561082(+) (pilD) [Pseudomonas germanica strain P9_87]
ATGCCTATCGACGAACTGTTTGCCGTGTATCCGCTAGCGTTTGTCGGCACCGCCCTGCTGCTGGGCCTGGTGGTCGGCAG
CTTCCTCAATGTGCTGATCTGGCGCCTGCCGAAAATGCTCGAACGCGACTGGCGCCAGCAGGCACACGATGTGCTCGGTT
TGCCCGGCGAAGCCTCGCAACCCGTCTACAACCTGATGCTGCCGCACTCCGAATGCCCCCATTGCGCCCACCGTATTCGC
CCGTGGGAGAACGTTCCCCTGCTCAGCTATCTATGGCTGCGCGGGCGCTGTTCAGCGTGCTCCGCACCGATCAGCAAACG
TTATCCGTTGACCGAGCTGGCCTGTGGGCTGCTCTCGGCCTTCATCGCCTGGCACTTGGGTTTCGGTTGGCCGGCGTGCT
TGCTGATCGTCCTCACCTGGGGTCTGCTGGCGATGAGTCTGATCGACACCGAGCATCAACTATTGCCTGATGTGCTGGTG
TTGCCGTTGCTGTGGCTGGGGTTGATCGTCAACAGTTTCGGCCTGTTCGTGACCTTGCACGATGCGTTGTGGGGCGCGGT
GGCCGGTTATCTGGCGCTGTGGTCAGTGTTCTGGCTGTTCAAACTGCTGACTGGCAAGGACGGCATCGGTCATGGTGATT
TCAAGCTGTTGGCGCTGCTGGGGGCATGGGGCGGCTGGCAGATTCTGCCGCTGACGATTCTGTTGTCATCACTGGTCGGC
GCCATTATCGGGGTGATTTTGTTGCGCCTGCGAGAGCAAAAAACCTCGACGCCAATCCCCTTCGGCCCTTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGCCTTCTATTGGCAGTTTGTCGGTTTGAAATGA
ATGCCTATCGACGAACTGTTTGCCGTGTATCCGCTAGCGTTTGTCGGCACCGCCCTGCTGCTGGGCCTGGTGGTCGGCAG
CTTCCTCAATGTGCTGATCTGGCGCCTGCCGAAAATGCTCGAACGCGACTGGCGCCAGCAGGCACACGATGTGCTCGGTT
TGCCCGGCGAAGCCTCGCAACCCGTCTACAACCTGATGCTGCCGCACTCCGAATGCCCCCATTGCGCCCACCGTATTCGC
CCGTGGGAGAACGTTCCCCTGCTCAGCTATCTATGGCTGCGCGGGCGCTGTTCAGCGTGCTCCGCACCGATCAGCAAACG
TTATCCGTTGACCGAGCTGGCCTGTGGGCTGCTCTCGGCCTTCATCGCCTGGCACTTGGGTTTCGGTTGGCCGGCGTGCT
TGCTGATCGTCCTCACCTGGGGTCTGCTGGCGATGAGTCTGATCGACACCGAGCATCAACTATTGCCTGATGTGCTGGTG
TTGCCGTTGCTGTGGCTGGGGTTGATCGTCAACAGTTTCGGCCTGTTCGTGACCTTGCACGATGCGTTGTGGGGCGCGGT
GGCCGGTTATCTGGCGCTGTGGTCAGTGTTCTGGCTGTTCAAACTGCTGACTGGCAAGGACGGCATCGGTCATGGTGATT
TCAAGCTGTTGGCGCTGCTGGGGGCATGGGGCGGCTGGCAGATTCTGCCGCTGACGATTCTGTTGTCATCACTGGTCGGC
GCCATTATCGGGGTGATTTTGTTGCGCCTGCGAGAGCAAAAAACCTCGACGCCAATCCCCTTCGGCCCTTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGCCTTCTATTGGCAGTTTGTCGGTTTGAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
53.448 |
100 |
0.534 |
| pilD | Vibrio campbellii strain DS40M4 |
51.773 |
97.241 |
0.503 |
| pilD | Acinetobacter baumannii D1279779 |
49.071 |
92.759 |
0.455 |
| pilD | Acinetobacter nosocomialis M2 |
49.071 |
92.759 |
0.455 |
| pilD | Neisseria gonorrhoeae MS11 |
47.037 |
93.103 |
0.438 |