NTDB

Overview

Name	comM	Type	Machinery gene
Locus tag	OH685_RS03865	Genome accession	NZ_CP125227
Coordinates	789878..791365 (-)	Length	495 a.a.
NCBI ID	WP_069036335.1	Uniprot ID	-
Organism	Acinetobacter pittii strain SO1
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 784878..796365

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OH685_RS03835 (OH685_03870)	-	784899..785087 (+)	189	WP_282463816.1	hypothetical protein	-
OH685_RS03840 (OH685_03875)	-	785126..785947 (+)	822	WP_213072847.1	TorF family putative porin	-
OH685_RS03845 (OH685_03880)	-	785989..786867 (-)	879	WP_126645294.1	dihydrodipicolinate synthase family protein	-
OH685_RS03850 (OH685_03885)	-	786883..787659 (-)	777	WP_126645293.1	aldolase	-
OH685_RS03855 (OH685_03890)	mocR	787771..789204 (+)	1434	WP_126645292.1	PLP-dependent aminotransferase family protein	-
OH685_RS03860 (OH685_03895)	yieF	789229..789774 (-)	546	WP_005804029.1	NADPH-dependent FMN reductase	-
OH685_RS03865 (OH685_03900)	comM	789878..791365 (-)	1488	WP_069036335.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
OH685_RS03870 (OH685_03905)	-	791431..791658 (-)	228	WP_002121136.1	accessory factor UbiK family protein	-
OH685_RS03875 (OH685_03910)	glnK	791937..792275 (+)	339	WP_000780326.1	P-II family nitrogen regulator	-
OH685_RS03880 (OH685_03915)	amtB	792333..793727 (+)	1395	WP_032063101.1	ammonium transporter	-
OH685_RS03885 (OH685_03920)	nrdR	793851..794309 (+)	459	WP_000543541.1	transcriptional regulator NrdR	-
OH685_RS03890 (OH685_03925)	ribD	794325..795410 (+)	1086	WP_282463817.1	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	-

Sequence

Protein

Download Length: 495 a.a. Molecular weight: 54484.55 Da Isoelectric Point: 7.3646

                                >NTDB_id=830436 OH685_RS03865 WP_069036335.1 789878..791365(-) (comM) [Acinetobacter pittii strain SO1]

MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR

LDLPIAIGILIASGQLPENCAEDFELIGELALDGHVRPVSGTLTLAMACQQAKHKMLLPLDNSQDISHLPNLECYPVSHL

KEVCDHFLGMKSLSSIEPATTSNQMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLSN

QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE

IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE

DSTAVRQRVIYAYEQQMQRQDCLNQALSPKQLEQYAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEMIQ

SPHLTEALSYRGNHS

Nucleotide

Download Length: 1488 bp

                                >NTDB_id=830436 OH685_RS03865 WP_069036335.1 789878..791365(-) (comM) [Acinetobacter pittii strain SO1]

ATGTCTTTTTCTAAAATTTATACACGGGGACTTTTAGGTTTACATGCACCTTTGATTGAGGTCGAGGTACATGTGAGTCA

AGGCTTACCTTCTCTTACTATTGTCGGCCTAGCAGAGGCGGCGGTAAGAGAAAGTAAAGACCGAGTTCGCTCAGCCATTA

TTAATAGTGGATTTCAATTTCCAACAAAACGGCTGACCATTAATCTTGCACCAGCAGATTTGCCCAAAGATGGATCACGT

CTAGATTTACCTATTGCTATAGGTATTTTAATTGCATCTGGCCAGCTCCCAGAAAACTGTGCCGAAGATTTTGAATTAAT

TGGTGAATTAGCTTTAGATGGACATGTAAGGCCAGTGTCAGGCACTTTAACTTTGGCAATGGCATGTCAACAGGCCAAGC

ATAAAATGCTTTTACCTCTCGATAACAGTCAGGATATTAGCCATTTACCGAATCTTGAATGTTATCCAGTGAGCCATTTA

AAAGAAGTTTGTGATCATTTCTTGGGCATGAAATCACTATCTTCGATTGAACCTGCAACGACCTCAAACCAAATGCCTTA

TAAATTTGATCTGGCAGATGTAAAAGGTCAGCTACGTCCACGTCGCGCACTAGAAATTGCCGCCGCAGGCGGGCACTCGC

TGCTCTTTAAAGGACCACCAGGTACAGGTAAGACTTTACTCGCTTCACGACTTCCTTCAATTTTGCCACCGCTTTCTAAT

CAGGAAACGCTTGAAGTCGCGAGTATTTATTCTATTTCAAATACACCGCATACCTTTGGTCAGCGTCCATTTCGCGCGCC

CCACCATACAGCATCAGCCATTGCACTAGTTGGGGGCGGCTCGCATCCTAAACCGGGTGAAATTACCTTATCTCATTTAG

GCGTTTTGTTTTTAGATGAACTCCCTGAGTTTGACAGAAAAGTTCTAGAGGTCTTACGTCAGCCGCTTGAGTCAAAAGAA

ATCATTATTTCACGTGCAGCTCGGCAAATTACTTATCCTGCAAACTTTCAGCTCATTGCAGCAATGAACCCTTGTCCATG

TGGTTATGCGTTTAATCAAGACAGCCGTTGCCAATGTTCGCCAGAGAGTATCAAGCGCTATCAAAACCGTATATCGGGAC

CATTACTTGACCGTATCGATTTACATATTGATGTACCGCCTTTAAAAGCTCAGGAACTGCAAGATCCAACACCTGCTGAA

GACTCTACGGCTGTAAGACAGCGTGTGATTTATGCTTATGAACAACAAATGCAAAGACAAGATTGTTTAAATCAAGCACT

TTCACCGAAACAACTTGAGCAATATGCTGTACTTGATAGTACTTCTCAACGAATGATTGAAATGGCTCAACAACGTTTGA

ATCTGTCGGCTCGTGCTTATCATCGTGTTTTACGGGTTGCTCGTACCATTGCCGATTTGGCGCAAAGTGAGATGATCCAA

AGTCCTCATCTTACAGAAGCGCTCTCTTATCGAGGCAATCATTCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comM	Vibrio cholerae strain A1552	50.806	100	0.509
comM	Glaesserella parasuis strain SC1401	50.1	100	0.505
comM	Legionella pneumophila str. Paris	49.398	100	0.497
comM	Legionella pneumophila strain ERS1305867	49.398	100	0.497
comM	Haemophilus influenzae Rd KW20	48.898	100	0.493
comM	Vibrio campbellii strain DS40M4	47.677	100	0.477
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	46.123	100	0.469

Detailed information NTG0830436