Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QMA14_RS01520 Genome accession   NZ_CP125087
Coordinates   315512..315979 (+) Length   155 a.a.
NCBI ID   WP_284174082.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain EL1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 310512..320979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMA14_RS01510 (QMA14_01510) - 311313..312386 (+) 1074 WP_284174080.1 Fic family protein -
  QMA14_RS01515 (QMA14_01515) uvrA 312518..315349 (-) 2832 WP_284174081.1 excinuclease ABC subunit UvrA -
  QMA14_RS01520 (QMA14_01520) ssb 315512..315979 (+) 468 WP_284174082.1 single-stranded DNA-binding protein Machinery gene
  QMA14_RS01525 (QMA14_01525) - 316039..316920 (-) 882 WP_284174083.1 pirin family protein -
  QMA14_RS01530 (QMA14_01530) - 317269..318063 (+) 795 WP_049364747.1 formate/nitrite transporter family protein -
  QMA14_RS01535 (QMA14_01535) - 318146..318514 (-) 369 WP_284174478.1 rhodanese-like domain-containing protein -
  QMA14_RS01540 (QMA14_01540) ygiD 318817..319602 (+) 786 WP_284174084.1 4,5-DOPA dioxygenase extradiol -
  QMA14_RS01545 (QMA14_01545) - 319698..319904 (-) 207 WP_049376040.1 YnbE family lipoprotein -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17277.20 Da        Isoelectric Point: 5.2536

>NTDB_id=829887 QMA14_RS01520 WP_284174082.1 315512..315979(+) (ssb) [Haemophilus parainfluenzae strain EL1]
MAGINKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVLYRRLAEIAGQYLRKGSQVYVEG
RLKTRKWQDNNGQDRYTTEIQGDNLQMLGARNQDMGGFAPAQSAPQPSYQSRPTQSAPAPQAEPPMDAFDDNIPF

Nucleotide


Download         Length: 468 bp        

>NTDB_id=829887 QMA14_RS01520 WP_284174082.1 315512..315979(+) (ssb) [Haemophilus parainfluenzae strain EL1]
ATGGCAGGTATTAATAAAGTAATCATCGTGGGTAATTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGCGAAGC
GGTAGCAAATATCAGCGTGGCAACAAGTGAAAGCTGGACAGATAAAAACACGGGTGAACGCCGTGAAGTGACCGAATGGC
ACCGTATCGTGTTATATCGTCGTTTAGCGGAAATTGCGGGTCAATACTTACGCAAAGGTTCACAAGTTTATGTTGAAGGT
CGTTTAAAAACCCGCAAATGGCAAGATAACAACGGCCAAGATCGTTACACCACTGAAATCCAAGGTGATAACTTACAAAT
GTTAGGTGCTCGCAATCAAGATATGGGCGGCTTTGCACCGGCACAATCAGCACCACAACCAAGCTATCAATCTCGTCCAA
CACAATCTGCGCCAGCACCACAAGCTGAGCCACCAATGGATGCGTTTGATGACAACATTCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

65.556

100

0.761
  ssb Vibrio cholerae strain A1552

58.286

100

0.658
  ssb Neisseria meningitidis MC58

47.977

100

0.535
  ssb Neisseria gonorrhoeae MS11

47.977

100

0.535
  ssb Latilactobacillus sakei subsp. sakei 23K

34.302

100

0.381