Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   QMA14_RS01310 Genome accession   NZ_CP125087
Coordinates   268254..268604 (-) Length   116 a.a.
NCBI ID   WP_284174060.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain EL1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 263254..273604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMA14_RS01290 (QMA14_01290) pflA 263592..264332 (-) 741 WP_049364009.1 pyruvate formate lyase 1-activating protein -
  QMA14_RS01295 (QMA14_01295) - 264450..264740 (-) 291 WP_005636456.1 putative quinol monooxygenase -
  QMA14_RS01300 (QMA14_01300) pflB 264819..267131 (-) 2313 WP_049371761.1 formate C-acetyltransferase -
  QMA14_RS01305 (QMA14_01305) focA 267186..268040 (-) 855 WP_284174059.1 formate transporter FocA -
  QMA14_RS01310 (QMA14_01310) comE1/comEA 268254..268604 (-) 351 WP_284174060.1 helix-hairpin-helix domain-containing protein Machinery gene
  QMA14_RS01315 (QMA14_01315) - 268749..269066 (-) 318 WP_005698058.1 heavy metal-binding domain-containing protein -
  QMA14_RS01320 (QMA14_01320) rdgB 269105..269704 (-) 600 WP_284174061.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  QMA14_RS01325 (QMA14_01325) - 269836..270207 (+) 372 WP_005698122.1 DUF305 domain-containing protein -
  QMA14_RS01330 (QMA14_01330) ispH 270256..271200 (-) 945 WP_284174062.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  QMA14_RS01335 (QMA14_01335) lspA 271197..271688 (-) 492 WP_284174063.1 signal peptidase II -
  QMA14_RS01340 (QMA14_01340) glmU 271805..273175 (-) 1371 WP_284174064.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -

Sequence

Protein


Download         Length: 116 a.a.        Molecular weight: 12840.68 Da        Isoelectric Point: 9.6912

>NTDB_id=829884 QMA14_RS01310 WP_284174060.1 268254..268604(-) (comE1/comEA) [Haemophilus parainfluenzae strain EL1]
MKLMKHLFSSLFVATTMLSSQVFAEEKVAEQAQPQAQVQQQTTSQTTQQAVSDKLNINTASASDIQKTLIGIGAKKAEAI
VQYREKHGNFTMAEQLLEVQGIGKATLEKNRDRIVF

Nucleotide


Download         Length: 351 bp        

>NTDB_id=829884 QMA14_RS01310 WP_284174060.1 268254..268604(-) (comE1/comEA) [Haemophilus parainfluenzae strain EL1]
ATGAAATTGATGAAACATTTATTTAGTTCATTATTTGTTGCGACCACAATGTTGAGCTCGCAAGTGTTTGCAGAAGAAAA
GGTAGCTGAACAGGCTCAACCTCAAGCGCAAGTTCAGCAACAAACCACATCACAAACTACACAACAAGCAGTGAGTGATA
AATTAAATATCAATACCGCCAGTGCATCAGACATTCAAAAAACGCTAATTGGTATTGGTGCGAAAAAGGCGGAAGCCATT
GTGCAGTATCGTGAAAAGCACGGTAATTTCACGATGGCAGAGCAATTGCTTGAAGTACAAGGCATTGGTAAAGCAACGTT
AGAGAAAAACCGCGATCGTATCGTGTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(53-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

66.372

97.414

0.647
  comEA/comE1 Glaesserella parasuis strain SC1401

55.263

98.276

0.543
  comEA Acinetobacter baylyi ADP1

37.302

100

0.405
  comEA Vibrio cholerae C6706

40.909

94.828

0.388
  comEA Vibrio cholerae strain A1552

40.909

94.828

0.388