Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   H7678_RS01815 Genome accession   NZ_AP023393
Coordinates   340257..342227 (+) Length   656 a.a.
NCBI ID   WP_046177889.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain 89     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 335257..347227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7678_RS01795 (SDSE89_03030) sufU 335300..335776 (+) 477 WP_003062583.1 Fe-S cluster assembly sulfur transfer protein SufU -
  H7678_RS01800 (SDSE89_03040) sufB 335769..337187 (+) 1419 WP_003054855.1 Fe-S cluster assembly protein SufB -
  H7678_RS01805 (SDSE89_03050) - 337363..338544 (-) 1182 WP_012766577.1 serine hydrolase -
  H7678_RS01810 (SDSE89_03060) pbp3 338688..339926 (-) 1239 WP_003057819.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  H7678_RS01815 (SDSE89_03070) amiA 340257..342227 (+) 1971 WP_046177889.1 peptide ABC transporter substrate-binding protein Regulator
  H7678_RS01820 (SDSE89_03080) amiC 342293..343795 (+) 1503 WP_003057826.1 ABC transporter permease Regulator
  H7678_RS01825 (SDSE89_03090) amiD 343795..344721 (+) 927 WP_003049687.1 oligopeptide ABC transporter permease OppC Regulator
  H7678_RS01830 (SDSE89_03100) amiE 344730..345800 (+) 1071 WP_003060269.1 ABC transporter ATP-binding protein Regulator
  H7678_RS01835 (SDSE89_03110) amiF 345793..346716 (+) 924 WP_184010359.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72040.38 Da        Isoelectric Point: 4.9908

>NTDB_id=82985 H7678_RS01815 WP_046177889.1 340257..342227(+) (amiA) [Streptococcus dysgalactiae subsp. equisimilis strain 89]
MKKSRWLATLGVAVLSVSVLAACGGKNASGGSDATKAYKYVFVNDPKSLDYILTNGGGTTDVITQMVDGLLENDEYGNLV
PSLAKDWKVSKDGLTYTYTLRDGVSWYTADGEEYAPVTAEDFVTGLKHAVDDKSDALYVVEDSIKNLKAYQNGEVDFKEV
GVKALDDKTVQYTLNKPESYWNSKTTYSVLFPVNAKFLKSKGKDFGTTDPSSILVNGAYFLSAFTSKSSMEFHKNENYWD
AKNVGIESVKLTYSDGSDPGSFYKNFDKGEFSVARLYPNDPTYKSAKKNYADNITYGMLTGDIRHLTWNLNRTSFKNTKK
DPAQQDAGKKALNNKDFRQAIQFAFDRASFQAQTAGQDAKTKALRNMLVPPTFVTIGENDFGSEVEKDLATMGDEWKDVN
LKDAQDGFYNPEKAKAEFAKAKEALTAEGVTFPVQLDYPVDQANAATVQEAQSFKQSVEASLGKENVIVNVLETETSTHE
AQGFYAETPEQQDYDIISSWWGPDYQDPRTYLDIMSPVGGGSVIQKLGIKAGQNQDVVAAAGLDTYQTLLDEAAAITDDN
DARYKAYAKAQAYLTDSAVDIPVVALGGTPRVSKAIPFSGGFSWAGAKGPLAYKGMRLQDKPVTAKQYEKAKEKWLKAKA
KSNAEYAEKLADHVEK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=82985 H7678_RS01815 WP_046177889.1 340257..342227(+) (amiA) [Streptococcus dysgalactiae subsp. equisimilis strain 89]
ATGAAGAAAAGTAGATGGTTAGCAACTCTAGGTGTTGCGGTATTATCAGTATCCGTTTTAGCAGCTTGTGGTGGCAAAAA
TGCCTCAGGCGGTTCAGATGCAACTAAAGCTTACAAGTATGTGTTTGTTAACGATCCAAAATCGTTGGATTACATTTTAA
CAAATGGTGGCGGAACGACTGATGTGATAACACAAATGGTTGATGGTCTTTTGGAAAACGATGAGTATGGTAATTTAGTA
CCATCACTTGCTAAAGATTGGAAGGTTTCAAAAGACGGTCTGACATATACTTATACTCTTCGCGATGGTGTCTCTTGGTA
CACGGCTGATGGTGAAGAATACGCACCTGTAACAGCAGAAGATTTTGTGACTGGTTTGAAGCACGCGGTTGACGATAAAT
CAGATGCTCTTTACGTTGTTGAAGATTCAATAAAAAACTTAAAGGCTTACCAAAATGGTGAAGTAGATTTTAAAGAAGTT
GGTGTCAAAGCCCTTGACGATAAAACTGTTCAGTATACTTTGAACAAGCCTGAAAGCTACTGGAATTCAAAAACAACTTA
TAGTGTGCTTTTCCCAGTTAATGCGAAATTTTTGAAGTCAAAAGGTAAAGATTTTGGTACAACCGATCCATCATCAATCC
TTGTTAATGGTGCTTACTTCTTGAGCGCCTTCACCTCAAAATCATCTATGGAATTCCATAAAAATGAAAACTACTGGGAT
GCTAAGAATGTTGGGATAGAATCTGTTAAATTGACTTACTCAGATGGTTCAGACCCAGGTTCTTTCTACAAGAACTTTGA
CAAGGGTGAGTTCAGCGTTGCACGACTTTACCCAAATGACCCTACCTACAAATCAGCTAAGAAAAACTATGCTGATAACA
TTACTTACGGAATGTTGACTGGTGATATCCGTCATTTAACATGGAACTTGAACCGTACTTCTTTCAAAAATACTAAGAAA
GACCCTGCACAACAAGATGCCGGTAAGAAAGCTCTTAACAACAAGGACTTCCGTCAAGCTATCCAGTTTGCTTTTGACCG
TGCATCATTCCAAGCACAAACTGCAGGTCAGGATGCCAAAACAAAAGCCTTACGTAACATGCTTGTGCCACCAACTTTTG
TGACCATCGGAGAAAATGACTTTGGTTCAGAAGTTGAAAAAGACCTTGCTACCATGGGTGATGAATGGAAAGATGTTAAT
TTAAAAGATGCTCAAGATGGATTTTATAATCCTGAAAAAGCAAAAGCTGAGTTTGCAAAAGCCAAAGAAGCTTTGACAGC
TGAAGGTGTAACCTTCCCAGTTCAATTAGATTATCCTGTTGACCAAGCCAACGCAGCAACTGTTCAAGAGGCTCAATCCT
TTAAACAATCTGTTGAAGCATCACTTGGTAAAGAAAATGTCATTGTCAATGTTCTTGAAACAGAAACATCAACTCACGAA
GCCCAAGGCTTCTATGCTGAGACCCCAGAACAACAAGACTACGATATCATTTCATCATGGTGGGGACCAGACTACCAAGA
TCCACGGACCTACCTTGACATCATGAGTCCAGTAGGTGGTGGATCTGTTATCCAAAAACTTGGAATCAAAGCAGGTCAAA
ATCAGGATGTTGTGGCAGCTGCAGGCCTTGATACCTACCAAACTCTTCTTGATGAAGCAGCAGCAATTACAGACGATAAC
GATGCTCGTTACAAAGCTTATGCAAAAGCACAAGCCTACCTTACTGATAGTGCCGTAGATATTCCGGTTGTGGCCTTGGG
TGGTACTCCTCGTGTTTCTAAAGCTATTCCATTTAGCGGCGGCTTCTCTTGGGCAGGTGCTAAAGGACCTCTAGCATATA
AAGGAATGAGACTTCAAGACAAACCTGTCACAGCAAAACAATACGAAAAAGCAAAAGAAAAATGGTTGAAAGCAAAGGCT
AAATCAAACGCAGAATATGCTGAGAAATTAGCTGATCACGTTGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(79-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

50.681

100

0.511
  amiA3 Streptococcus thermophilus LMG 18311

49.698

100

0.502
  amiA3 Streptococcus thermophilus LMD-9

49.396

100

0.498

Multiple sequence alignment