Detailed information NTG0082989

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: H7678_RS01835
• Genome accession: NZ_AP023393
• Coordinates: 345793..346716 (+)
• Length: 307 a.a.
• NCBI ID: WP_184010359.1
• Uniprot ID: -
• Organism: Streptococcus dysgalactiae subsp. equisimilis strain 89
• Function: internalize XIP (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	346744..347730	345793..346716	flank	28

Gene organization within MGE regions

Location: 345793..347730

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H7678_RS01835 (SDSE89_03110)	amiF	345793..346716 (+)	924	WP_184010359.1	ABC transporter ATP-binding protein	Regulator
H7678_RS01840 (SDSE89_03120)	-	346744..347730 (-)	987	WP_184010362.1	IS30 family transposase	-

Sequence

Protein

• Length: 307 a.a.
• Molecular weight: 34806.97 Da
• Isoelectric Point: 6.4058

>NTDB_id=82989 H7678_RS01835 WP_184010359.1 345793..346716(+) (amiF) [Streptococcus dysgalactiae subsp. equisimilis strain 89]
MSEKLVEVKDLEISFGEGKKKFVAVKNANFFIKKGETFSLVGESGSGKTTIGRAIIGLNDTSSGDILYDGKVINRRKPKS
ESNELIRKIQMIFQDPAASLNERATVDYIISEGLYNFNLFKTEEERKEKIKNMMAEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMNPEFVIADEPISALDVSVRAQVLNLLKRMQAEKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFN
NPIHPYTKSLLSAVPIPDPILERQKELIVYNPEQHDYTEDKPTMVEIKPNHFVWANQAEVEKYKAEQ

Nucleotide

• Length: 924 bp

>NTDB_id=82989 H7678_RS01835 WP_184010359.1 345793..346716(+) (amiF) [Streptococcus dysgalactiae subsp. equisimilis strain 89]
ATGTCTGAGAAATTAGTCGAAGTTAAAGACCTAGAAATTTCCTTCGGAGAGGGAAAGAAAAAATTTGTTGCGGTTAAAAA
TGCCAATTTCTTTATCAAAAAAGGTGAAACTTTCTCTTTAGTTGGAGAATCTGGAAGTGGTAAAACAACAATTGGTCGTG
CTATTATTGGTTTGAATGATACCAGTTCTGGCGACATCCTTTATGATGGAAAAGTTATCAATCGAAGAAAGCCAAAATCA
GAATCAAATGAGCTCATTCGTAAGATTCAAATGATTTTCCAAGATCCTGCAGCTAGTCTGAATGAACGTGCAACTGTTGA
CTATATCATTTCAGAAGGTCTTTATAATTTTAATCTGTTCAAAACAGAAGAAGAGCGTAAGGAAAAGATTAAGAACATGA
TGGCCGAAGTTGGTTTGTTATCAGAACATTTGACTCGCTATCCTCACGAATTTTCAGGGGGCCAACGCCAGCGGATCGGT
ATCGCTAGAGCCCTAGTGATGAATCCCGAATTTGTCATTGCTGACGAACCTATCTCCGCTCTAGACGTTTCTGTTCGAGC
ACAGGTCTTGAATCTTCTTAAAAGAATGCAAGCCGAAAAAGGACTTACATATCTTTTCATCGCCCACGACCTATCAGTTG
TTCGTTTTATTTCAGATCGTATTGCGGTTATCCATAAAGGTGTTATTGTGGAGGTTGCTGAAACAGAAGAACTGTTCAAT
AATCCTATCCACCCGTATACAAAATCTCTTTTATCAGCTGTTCCGATTCCAGATCCAATATTGGAACGTCAAAAAGAGCT
TATTGTCTATAACCCAGAGCAACATGACTATACAGAAGATAAACCAACGATGGTTGAAATTAAGCCAAATCACTTTGTGT
GGGCTAATCAAGCAGAAGTTGAAAAGTATAAAGCAGAACAATAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (230-262)

• ABC transporter (ABC_tran) (25-178)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMG 18311	81.433	100	0.814
amiF	Streptococcus thermophilus LMD-9	81.107	100	0.811
amiF	Streptococcus salivarius strain HSISS4	81.107	100	0.811