Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   H7678_RS01820 Genome accession   NZ_AP023393
Coordinates   342293..343795 (+) Length   500 a.a.
NCBI ID   WP_003057826.1    Uniprot ID   A0AAE9U2R6
Organism   Streptococcus dysgalactiae subsp. equisimilis strain 89     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 337293..348795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7678_RS01805 (SDSE89_03050) - 337363..338544 (-) 1182 WP_012766577.1 serine hydrolase -
  H7678_RS01810 (SDSE89_03060) pbp3 338688..339926 (-) 1239 WP_003057819.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  H7678_RS01815 (SDSE89_03070) amiA 340257..342227 (+) 1971 WP_046177889.1 peptide ABC transporter substrate-binding protein Regulator
  H7678_RS01820 (SDSE89_03080) amiC 342293..343795 (+) 1503 WP_003057826.1 ABC transporter permease Regulator
  H7678_RS01825 (SDSE89_03090) amiD 343795..344721 (+) 927 WP_003049687.1 oligopeptide ABC transporter permease OppC Regulator
  H7678_RS01830 (SDSE89_03100) amiE 344730..345800 (+) 1071 WP_003060269.1 ABC transporter ATP-binding protein Regulator
  H7678_RS01835 (SDSE89_03110) amiF 345793..346716 (+) 924 WP_184010359.1 ABC transporter ATP-binding protein Regulator
  H7678_RS01840 (SDSE89_03120) - 346744..347730 (-) 987 WP_184010362.1 IS30 family transposase -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 55942.32 Da        Isoelectric Point: 10.2619

>NTDB_id=82986 H7678_RS01820 WP_003057826.1 342293..343795(+) (amiC) [Streptococcus dysgalactiae subsp. equisimilis strain 89]
MKKYILNRILRSLVSVVLVTALTYTIVYTLVPVGLIFKQDPNYNKMTTTPDKKAAYESLTFQRMGYINYFSSKELKDNAS
KIDSSVTTEATSANKVIYEKYIHSLGNGWQLKRFPVSKKFYATRKIPIYERVWNFFSNLVVIDHPWKIQDKNNPNLARYV
RLENDKSIGWSLVGSGTQHKYLVYANGKFPYLHQNLVTLNLGTSYPTYSNIPVLQVISQGQGRTALQDVTFPSGVTKKSS
VDIYSRTYKNPKSMDDITKANYGKGDSYTKTINNYVDPSMIHNSFVIGFFGVLIAYVIGLPLGLFMARFKNTYFDRFSTA
TMTFMLALPSIAVIYVVRFLGSMVGLPDSFPMLGASSPKSYVLPALILGILSIPSTVIWFRRYLVDLQASDWVRFARSKG
LSESEIYRDHLFKNAMVPIVSGIPASIILAIGGATLTETVFAFPGMGKMLIDSIKSANNSMIVGLTFIFTVLSIVSLLLG
DIAMTIVDPRIKLSTKKGGK

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=82986 H7678_RS01820 WP_003057826.1 342293..343795(+) (amiC) [Streptococcus dysgalactiae subsp. equisimilis strain 89]
ATGAAAAAATACATTTTAAACCGTATCTTACGATCGTTAGTATCGGTTGTTCTGGTAACGGCTTTAACATACACTATCGT
ATATACCCTCGTCCCTGTCGGTCTTATCTTTAAACAAGACCCTAACTACAATAAGATGACGACGACACCAGATAAAAAGG
CTGCTTATGAAAGCTTAACCTTCCAACGTATGGGGTATATTAATTACTTTTCAAGTAAAGAATTAAAAGATAATGCTTCT
AAAATAGATAGTAGTGTAACGACTGAAGCGACTAGTGCTAACAAGGTTATTTATGAGAAATATATTCATTCCCTCGGTAA
TGGCTGGCAGCTAAAACGTTTCCCGGTTAGCAAAAAATTCTATGCTACTCGTAAGATTCCTATTTACGAACGTGTTTGGA
ACTTCTTTTCAAACTTAGTTGTTATTGACCATCCTTGGAAAATTCAAGACAAGAATAACCCTAATCTAGCTAGATATGTT
CGCCTTGAAAATGATAAATCTATTGGCTGGTCACTTGTTGGATCGGGGACACAACACAAATACCTTGTTTATGCCAATGG
CAAGTTCCCTTACCTTCACCAAAACCTTGTTACCCTAAACTTAGGAACATCTTATCCAACATACAGCAATATTCCTGTTC
TTCAGGTTATTTCACAAGGACAAGGACGAACAGCTCTTCAAGATGTTACTTTCCCATCAGGAGTGACTAAAAAATCATCA
GTGGATATTTACAGTCGTACTTATAAAAATCCAAAATCAATGGATGATATTACCAAAGCAAACTATGGTAAGGGCGATTC
ATATACTAAGACCATTAATAACTATGTTGACCCATCAATGATTCACAATTCCTTTGTTATTGGGTTCTTTGGTGTCCTAA
TTGCTTATGTTATTGGACTACCTCTCGGTCTATTTATGGCACGCTTTAAAAATACCTATTTTGATCGTTTTTCAACAGCA
ACCATGACCTTCATGCTTGCCTTACCAAGTATTGCCGTTATCTATGTTGTTCGCTTCCTAGGAAGTATGGTTGGCTTGCC
AGATAGTTTTCCTATGCTAGGAGCGTCTAGCCCTAAATCTTACGTATTGCCAGCTCTTATTTTGGGAATTTTAAGTATCC
CAAGTACAGTTATCTGGTTCCGTCGCTATCTTGTTGACCTTCAGGCTAGTGATTGGGTACGGTTTGCTCGCTCAAAAGGG
TTATCAGAATCTGAAATTTATAGAGACCACCTTTTCAAAAATGCTATGGTTCCGATTGTCTCAGGTATTCCGGCAAGTAT
TATTCTTGCGATTGGTGGAGCGACATTAACAGAGACGGTTTTTGCCTTCCCAGGTATGGGGAAAATGTTGATTGATTCTA
TCAAATCAGCTAACAACTCAATGATTGTTGGGTTAACCTTTATTTTCACTGTCTTGTCAATTGTATCTCTACTGTTAGGA
GATATTGCTATGACAATTGTCGATCCACGTATTAAATTGTCAACTAAAAAAGGAGGTAAGTAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

60

100

0.6
  amiC Streptococcus thermophilus LMD-9

59.8

100

0.598
  amiC Streptococcus thermophilus LMG 18311

59.8

100

0.598

Multiple sequence alignment