Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   R8611_RS05935 Genome accession   NZ_AP026927
Coordinates   1173941..1174510 (-) Length   189 a.a.
NCBI ID   WP_224757260.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700178     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1168941..1179510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8611_RS05905 (PC0174_11610) - 1169056..1169298 (+) 243 WP_000710764.1 type B 50S ribosomal protein L31 -
  R8611_RS05910 (PC0174_11620) - 1169355..1169933 (-) 579 WP_317647827.1 iron permease -
  R8611_RS05915 (PC0174_11630) - 1169908..1170921 (-) 1014 Protein_1173 Dyp-type peroxidase -
  R8611_RS05920 (PC0174_11650) - 1170891..1171382 (-) 492 Protein_1174 winged helix-turn-helix domain-containing protein -
  R8611_RS05925 (PC0174_11660) gdhA 1171916..1173262 (+) 1347 WP_050200012.1 NADP-specific glutamate dehydrogenase -
  R8611_RS05930 (PC0174_11670) - 1173758..1173928 (-) 171 WP_000711943.1 hypothetical protein -
  R8611_RS05935 (PC0174_11680) comA 1173941..1174510 (-) 570 WP_224757260.1 ATP-binding cassette domain-containing protein Regulator
  R8611_RS05940 (PC0174_11690) - 1174536..1174799 (-) 264 Protein_1178 transposase -
  R8611_RS05945 (PC0174_11700) - 1174798..1175085 (+) 288 Protein_1179 transposase -
  R8611_RS05950 (PC0174_11710) - 1175384..1175602 (-) 219 Protein_1180 hypothetical protein -
  R8611_RS05955 (PC0174_11720) - 1176037..1176216 (-) 180 WP_001809341.1 hypothetical protein -
  R8611_RS05960 (PC0174_11730) - 1176396..1176533 (-) 138 WP_000807141.1 hypothetical protein -
  R8611_RS05965 (PC0174_11740) - 1176666..1177985 (-) 1320 WP_000945311.1 FtsX-like permease family protein -
  R8611_RS05970 (PC0174_11750) - 1177988..1178728 (-) 741 WP_000356590.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 21165.64 Da        Isoelectric Point: 9.2628

>NTDB_id=82935 R8611_RS05935 WP_224757260.1 1173941..1174510(-) (comA) [Streptococcus pneumoniae strain PZ900700178]
MPSRLYKIDTGKVLFDGININQIDKKILSQNLGVVPQDSFLLNRSILDNITLKHEVTSQKIEEVCKAVQIYDEIMAMPMK
FNTIISEMGSNISGGQRQRIALARALINNPSIVILDEATSALDTINEGRITKYIQSQGCTQIIIAHRLSTIKDADIIFVM
KGGKIVESGNHKYLMTLGGEYYSLYTKRK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=82935 R8611_RS05935 WP_224757260.1 1173941..1174510(-) (comA) [Streptococcus pneumoniae strain PZ900700178]
ATACCATCAAGATTATATAAGATTGATACAGGAAAAGTTTTATTTGATGGTATAAATATTAATCAAATAGATAAAAAAAT
ATTAAGTCAAAATTTAGGAGTAGTTCCACAGGATTCATTTTTATTGAACCGAAGTATTCTTGATAATATAACTTTAAAGC
ACGAAGTTACTTCACAAAAGATAGAGGAAGTTTGTAAAGCAGTTCAAATCTATGATGAAATCATGGCTATGCCGATGAAA
TTTAATACTATCATCTCAGAGATGGGGTCAAATATTTCAGGTGGGCAAAGGCAACGGATAGCACTGGCACGTGCATTAAT
AAATAATCCTAGTATTGTAATTTTAGATGAAGCAACTAGTGCATTAGACACTATTAATGAGGGAAGAATAACAAAGTATA
TACAAAGTCAGGGTTGTACTCAAATAATTATAGCTCATAGATTGTCAACGATTAAGGATGCGGATATTATTTTTGTAATG
AAAGGTGGTAAGATTGTTGAGTCAGGAAATCATAAGTACTTAATGACTCTTGGTGGAGAGTACTACAGCTTATATACAAA
AAGGAAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(4-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus gordonii str. Challis substr. CH1

41.489

99.471

0.413
  comA Streptococcus mitis NCTC 12261

41.935

98.413

0.413
  comA/nlmT Streptococcus mutans UA159

41.848

97.354

0.407
  comA Streptococcus mitis SK321

41.398

98.413

0.407
  comA Streptococcus pneumoniae D39

40.86

98.413

0.402
  comA Streptococcus pneumoniae R6

40.86

98.413

0.402
  comA Streptococcus pneumoniae Rx1

40.86

98.413

0.402
  comA Streptococcus pneumoniae TIGR4

39.785

98.413

0.392

Multiple sequence alignment