Detailed information NTG0829097

Bioinformatically predicted

Overview

• Name: pilQ
• Type: Machinery gene
• Locus tag: SID94_RS01660
• Genome accession: NZ_CP139039
• Coordinates: 368353..369591 (+)
• Length: 412 a.a.
• NCBI ID: WP_071595741.1
• Uniprot ID: -
• Organism: Escherichia coli MP1
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 363353..374591

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SID94_RS01635 (SID94_01635)	mrcA	363633..366185 (-)	2553	WP_001296475.1	peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA	-
SID94_RS01640 (SID94_01640)	hofM	366305..367084 (+)	780	WP_001296474.1	DNA utilization protein HofM	-
SID94_RS01645 (SID94_01645)	hofN	367084..367623 (+)	540	WP_001069336.1	DNA utilization protein HofN	-
SID94_RS01650 (SID94_01650)	hofO	367607..368047 (+)	441	WP_001055743.1	DNA utilization protein HofO	-
SID94_RS01655 (SID94_01655)	hofP	368037..368441 (+)	405	WP_032286839.1	DNA utilization protein HofP	-
SID94_RS01660 (SID94_01660)	pilQ	368353..369591 (+)	1239	WP_071595741.1	DNA uptake porin HofQ	Machinery gene
SID94_RS01665 (SID94_01665)	aroK	369992..370513 (+)	522	WP_000818618.1	shikimate kinase AroK	-
SID94_RS01670 (SID94_01670)	aroB	370570..371658 (+)	1089	WP_000439850.1	3-dehydroquinate synthase	-
SID94_RS01675 (SID94_01675)	damX	371750..373036 (+)	1287	WP_000343172.1	cell division protein DamX	-
SID94_RS01680 (SID94_01680)	dam	373143..373979 (+)	837	WP_000742141.1	adenine-specific DNA-methyltransferase	-

Sequence

Protein

• Length: 412 a.a.
• Molecular weight: 44795.29 Da
• Isoelectric Point: 5.9488

>NTDB_id=829097 SID94_RS01660 WP_071595741.1 368353..369591(+) (pilQ) [Escherichia coli MP1]
MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVVSPDVSGTVSLHLTDVPWKQALQTVVKSAGL
ITRQEGNILSVHSVAWQNDNIARQEAEQVRAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDN
KTALSTLEQWVSQMDLPVGQVELSAHIVTINEKSLRELGVKWTLADAQQGGGVGQVTTLGSDLSVATATTHIGFNIGRIN
GRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKL
HISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERREL
VVFITPRLVSSE

Nucleotide

• Length: 1239 bp

>NTDB_id=829097 SID94_RS01660 WP_071595741.1 368353..369591(+) (pilQ) [Escherichia coli MP1]
ATGAAGCAATGGATAGCCGCACTACTGTTGATGCTGATACCCGGCGTACAGGCGGCAAAGCCGCAAAAAGTGACGCTGAT
GGTGGATGACGTTCCGGTAGCTCAGGTGTTGCAGGCGCTGGCTGAACAGGAGAAGTTGAACCTGGTGGTTTCGCCAGACG
TCAGCGGTACGGTGTCGTTACATCTAACAGATGTTCCCTGGAAGCAGGCACTACAAACTGTAGTGAAAAGCGCCGGACTG
ATAACGCGGCAGGAAGGCAATATTCTCTCGGTGCATTCCGTTGCCTGGCAGAATGACAATATCGCCCGCCAGGAGGCGGA
GCAGGTGCGGGCGCAGGCAAATCTGCCGCTGGAAAATCGCAATATTACTCTGCAATACGCCGACGCCGGAGAGCTGGCGA
AAGCGGGGGAGAAGCTACTGAGTGCCAAAGGGAGTATGACCGTCGATAAACGCACCAATCGCCTTTTGCTGCGAGATAAC
AAAACGGCGTTAAGCACGCTTGAACAGTGGGTATCGCAAATGGATCTGCCGGTCGGGCAGGTTGAGCTGTCGGCGCATAT
TGTCACCATTAATGAAAAAAGTTTGCGTGAGTTAGGTGTGAAATGGACGTTGGCCGATGCGCAACAAGGTGGTGGCGTTG
GGCAAGTCACCACGCTTGGCAGCGACCTCTCCGTAGCGACGGCGACAACGCATATCGGTTTTAACATTGGACGCATCAAC
GGACGTTTACTGGATCTTGAGCTTTCCGCGCTCGAACAAAAACAGCAGCTGGATATTATCGCCAGTCCGCGTCTGCTGGC
CTCACATCTTCAGCCTGCCAGCATTAAACAGGGGAGCGAAATTCCATATCAGGTTTCCAGCGGGGAAAGTGGCGCGACGT
CGGTAGAATTTAAAGAGGCCGTCCTGGGGATGGAAGTCACGCCCACGGTGTTACAAAAAGGTCGCATCCGGCTGAAATTA
CACATCAGCCAGAACGTTCCGGGGCAGGTGCTACAGCAGGCAGATGGCGAAGTGCTGGCGATTGATAAGCAGGAGATCGA
AACGCAGGTCGAGGTCAAAAGCGGAGAAACGTTGGCGCTGGGCGGCATTTTTACCCGTAAAAATAAATCGGGTCAGGATA
GCGTACCGTTGCTTGGCGACATTCCCTGGTTCGGGCAATTATTTCGTCATGACGGAAAAGAAGATGAACGACGCGAGTTA
GTGGTGTTTATCACGCCACGACTGGTTTCCAGTGAGTAA

Domains

Predicted by InterProScan.

• Bacterial type II/III secretion system short domain (Secretin_N) (120-179)

• Bacterial type II and III secretion system protein (Secretin) (250-409)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilQ	Vibrio campbellii strain DS40M4	38.443	100	0.396
comE	Haemophilus influenzae Rd KW20	37.156	100	0.393
comE	Haemophilus influenzae 86-028NP	36.927	100	0.391
pilQ	Vibrio cholerae strain A1552	37.772	100	0.379
pilQ	Vibrio cholerae O1 biovar El Tor strain E7946	37.772	100	0.379
pilQ	Pseudomonas aeruginosa PAK	34.633	100	0.367
comE	Glaesserella parasuis strain SC1401	35.545	100	0.364