Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   QL049_RS09750 Genome accession   NZ_CP124856
Coordinates   2072675..2074615 (-) Length   646 a.a.
NCBI ID   WP_309257274.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain 452964 isolate human     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 2067675..2079615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QL049_RS09735 (QL049_09740) recQ 2067923..2069704 (-) 1782 WP_190320827.1 DNA helicase RecQ -
  QL049_RS09740 (QL049_09745) - 2069714..2071591 (-) 1878 WP_015728743.1 ABC-F family ATP-binding cassette domain-containing protein -
  QL049_RS09745 (QL049_09750) - 2071703..2072518 (+) 816 WP_096548109.1 ZIP family metal transporter -
  QL049_RS09750 (QL049_09755) comA 2072675..2074615 (-) 1941 WP_309257274.1 peptide cleavage/export ABC transporter Regulator
  QL049_RS09755 (QL049_09760) comA 2074615..2074914 (-) 300 WP_202612955.1 cysteine peptidase family C39 domain-containing protein Regulator
  QL049_RS09760 (QL049_09765) - 2075039..2075221 (-) 183 WP_037543780.1 hypothetical protein -
  QL049_RS09765 (QL049_09770) - 2075293..2075601 (-) 309 WP_049770161.1 DUF3884 family protein -
  QL049_RS09770 (QL049_09775) - 2075673..2076962 (-) 1290 WP_051144739.1 glycosyltransferase -

Sequence

Protein


Download         Length: 646 a.a.        Molecular weight: 73828.64 Da        Isoelectric Point: 9.8838

>NTDB_id=828536 QL049_RS09750 WP_309257274.1 2072675..2074615(-) (comA) [Staphylococcus pseudintermedius strain 452964 isolate human]
MRCDKKYIYIADPVVNLTKMPYREFKEEWTGVTILLKPTSLYKPIKQDKVRLTYFIPLLLKEKRLIIKIIIISILVNMIN
ILGSYFMKSIIDFYIPQKLKTWVSMISMALIASYIMQQILSYLQKYFLILLVKTYSINILSPYIKHLFRLPITFFETGRA
GDILSRLNDANSITDALASTMLSLFLDVTIIVGISIFLYYQSTILFVLILIIIPIYAVIVFGFMNSFERKRIKSMEANAT
LSSYLMENITGMETIKALTCEKKCYKQIKYNFSNYYEKTFLLNKLNIKQNVLKKVVQLILNVSILWVGANLVIDNQISIG
TLLVFNSLMIYFMNPIENIMNLQLKLQIAGVANNRLNEIFTVKSEFEKNKLDIKLNQNSSKLIFSNISYGYVYEKEILTD
INITIEHNSKVAFIGESGSGKTTLAKLMVSFFEPSKGKITLGGLDITNINKSVLRQQIIYIPQQTYIFNGTILENLLLGV
VKEVTQKDIDSAIKMVELKSFIDSLPLGLDSVLSSDFSALSGGQRQKIALARALLTNSSILIMDEATSNIDILTERKIIN
NLMALNKTIIFISHNLNITQKVDKIFVLAKGKIIEEGSHEFLLKAKGYYSNLINNGIFCINTTNVKNEMKVLFFHTFYFL
NFTIIT

Nucleotide


Download         Length: 1941 bp        

>NTDB_id=828536 QL049_RS09750 WP_309257274.1 2072675..2074615(-) (comA) [Staphylococcus pseudintermedius strain 452964 isolate human]
ATTAGATGTGATAAAAAGTATATCTATATAGCTGACCCTGTTGTTAATTTAACAAAGATGCCTTATAGGGAATTTAAAGA
AGAGTGGACTGGAGTTACAATCTTATTAAAACCTACATCTTTATATAAGCCTATAAAGCAAGATAAAGTTCGTTTAACTT
ATTTTATACCTTTATTATTAAAAGAAAAAAGATTGATTATAAAAATAATAATCATTTCCATTTTAGTCAATATGATAAAT
ATTTTAGGTTCATATTTTATGAAGTCAATTATTGATTTTTATATTCCCCAAAAGTTAAAAACATGGGTTAGTATGATTTC
CATGGCTTTAATTGCTTCTTACATTATGCAACAAATTCTTAGTTATTTGCAGAAATATTTTTTGATTTTATTAGTAAAGA
CATATTCTATAAATATACTTTCACCATACATTAAACATTTGTTTAGATTACCTATTACTTTTTTTGAAACGGGAAGAGCA
GGAGACATACTATCAAGACTTAATGATGCAAATTCAATTACTGATGCTTTAGCTAGTACCATGCTATCATTGTTTTTAGA
TGTTACAATAATAGTTGGCATATCTATCTTCCTGTATTATCAAAGTACTATTTTATTTGTATTAATATTAATTATCATTC
CTATTTATGCCGTAATTGTTTTTGGTTTTATGAACTCTTTTGAACGGAAAAGAATAAAATCTATGGAGGCAAATGCTACT
TTGTCTTCTTATTTGATGGAAAATATAACAGGTATGGAGACGATAAAAGCACTGACATGTGAAAAGAAATGCTATAAGCA
GATAAAATATAATTTTTCGAATTATTACGAAAAAACATTCTTGTTAAACAAACTAAATATAAAGCAAAACGTTTTGAAAA
AGGTTGTTCAATTAATATTAAATGTATCGATTTTATGGGTAGGCGCTAACCTAGTTATAGATAATCAAATCTCAATTGGA
ACTTTGCTTGTTTTTAATTCATTAATGATTTACTTTATGAATCCAATAGAAAATATTATGAATTTACAGCTTAAATTACA
AATAGCAGGTGTGGCTAATAATCGATTGAATGAAATATTCACAGTTAAATCAGAATTTGAAAAGAATAAATTGGATATCA
AATTGAACCAAAACTCAAGTAAACTTATATTTTCAAATATTTCATATGGATATGTGTACGAAAAAGAAATCCTTACAGAT
ATTAATATAACAATAGAACATAATAGTAAAGTAGCCTTTATTGGAGAGTCTGGATCAGGTAAAACAACTTTGGCGAAATT
GATGGTTAGTTTTTTTGAACCTTCAAAGGGTAAAATAACACTAGGTGGATTGGACATAACAAATATCAATAAATCTGTTT
TAAGACAGCAGATTATATACATTCCACAACAAACTTATATTTTTAATGGAACTATACTTGAAAATCTTTTATTAGGGGTA
GTTAAAGAGGTTACGCAAAAGGACATAGATAGTGCTATTAAAATGGTTGAACTAAAATCCTTTATTGATAGCTTACCACT
TGGACTTGATAGTGTATTAAGTTCTGATTTTTCTGCTTTGTCAGGAGGTCAGCGGCAGAAGATAGCTTTAGCAAGAGCAC
TATTAACAAATTCTTCTATATTGATAATGGATGAAGCAACGAGTAATATTGATATACTCACGGAGAGAAAAATTATTAAT
AATTTGATGGCGTTAAATAAAACTATTATATTTATCTCCCATAATCTAAATATAACTCAAAAAGTAGATAAAATATTTGT
TTTAGCAAAAGGAAAAATTATAGAAGAGGGCTCACATGAATTTTTATTAAAAGCAAAAGGTTACTATTCTAACTTAATTA
ATAATGGTATTTTTTGTATTAACACAACCAATGTGAAGAACGAAATGAAGGTACTGTTTTTTCACACCTTTTATTTTCTG
AATTTTACAATTATAACTTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(67-335)

Peptidase C39 family (Peptidase_C39)

(3-39)

ABC transporter (ABC_tran)

(398-548)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis SK321

52.28

95.046

0.497
  comA Streptococcus mitis NCTC 12261

52.117

95.046

0.495
  comA Streptococcus pneumoniae Rx1

51.792

95.046

0.492
  comA Streptococcus pneumoniae D39

51.792

95.046

0.492
  comA Streptococcus pneumoniae R6

51.792

95.046

0.492
  comA Streptococcus pneumoniae TIGR4

51.466

95.046

0.489
  comA Streptococcus gordonii str. Challis substr. CH1

51.466

95.046

0.489
  comA/nlmT Streptococcus mutans UA159

48.764

93.963

0.458