Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   SGQ75_RS08090 Genome accession   NZ_CP138880
Coordinates   1683281..1684285 (-) Length   334 a.a.
NCBI ID   WP_001005767.1    Uniprot ID   Q6GG63
Organism   Staphylococcus aureus strain 98     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1678281..1689285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGQ75_RS08075 (SGQ75_08075) yajC 1680813..1681073 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  SGQ75_RS08080 (SGQ75_08080) tgt 1681092..1682231 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  SGQ75_RS08085 (SGQ75_08085) queA 1682254..1683279 (-) 1026 WP_001008435.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  SGQ75_RS08090 (SGQ75_08090) ruvB 1683281..1684285 (-) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  SGQ75_RS08095 (SGQ75_08095) ruvA 1684317..1684919 (-) 603 WP_000271551.1 Holliday junction branch migration protein RuvA Machinery gene
  SGQ75_RS08100 (SGQ75_08100) - 1684933..1685388 (-) 456 WP_000368899.1 ACT domain-containing protein -
  SGQ75_RS08105 (SGQ75_08105) obgE 1685401..1686693 (-) 1293 WP_000496100.1 GTPase ObgE -
  SGQ75_RS08110 (SGQ75_08110) rpmA 1686913..1687197 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  SGQ75_RS08115 (SGQ75_08115) - 1687209..1687529 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  SGQ75_RS08120 (SGQ75_08120) rplU 1687535..1687843 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  SGQ75_RS08125 (SGQ75_08125) mreD 1688079..1688609 (-) 531 WP_001259930.1 rod shape-determining protein MreD -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37718.00 Da        Isoelectric Point: 5.0865

>NTDB_id=828433 SGQ75_RS08090 WP_001005767.1 1683281..1684285(-) (ruvB) [Staphylococcus aureus strain 98]
MNERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPPGLGKTTLSNIIANEMEVN
IRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATT
RAGSLTGPLRDRFGVHLRLEYYNESDLKEIIIRTAEVLGTGIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQI
YIETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDTIAVTIGEERITIEDVYEPFLIQKGFLERTPRGRKATP
LAYEHFAKSNEERE

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=828433 SGQ75_RS08090 WP_001005767.1 1683281..1684285(-) (ruvB) [Staphylococcus aureus strain 98]
ATGAATGAGCGTATGGTTGATCAATCAATGCATAGTGAAGAAACTGATTTCGAATTGTCGCTTAGACCTACGAGATTACG
ACAATATATTGGTCAAAATTCAATAAAAAGTAATTTAGAAGTATTTATTAAAGCGGCTAAACTTCGTCATGAACCATTAG
ATCATGTATTGCTTTTTGGCCCCCCTGGATTAGGTAAGACAACATTATCTAATATCATTGCCAATGAAATGGAAGTTAAT
ATACGTACAGTATCAGGGCCTTCATTAGAAAGACCTGGTGATTTGGCTGCAATTTTATCAGGACTTCAACCTGGAGATGT
TTTGTTTATTGATGAAATACACAGACTGAGTAGTGTTGTTGAAGAAGTGTTATACCCTGCAATGGAAGATTTCTTTTTAG
ATATTATCATTGGTAAAGGCGATGAGGCTAGAAGTATCCGTATCGACTTACCTCCATTCACTTTGGTAGGTGCAACAACG
CGAGCTGGCAGCTTAACAGGTCCACTAAGGGATCGATTTGGTGTGCACTTAAGATTAGAATATTATAATGAATCAGATTT
AAAAGAAATCATTATTAGAACAGCTGAGGTTTTAGGCACAGGTATTGATGAAGAAAGTGCCATTGAACTTGCTAAACGTT
CTAGAGGGACTCCAAGAGTAGCAAATCGACTATTGAAGCGGGTAAGAGACTTCCAGCAAGTGAATGAAGATGAACAAATA
TACATTGAAACAACGAAGCACGCATTAGGTTTACTTCAAGTTGATCAACACGGACTAGATTACATTGATCATAAAATGAT
GAACTGTATTATTAAGCAGTATAATGGTGGACCTGTTGGTTTAGATACGATTGCCGTAACAATTGGTGAAGAACGTATTA
CAATTGAGGACGTTTATGAGCCATTTCTTATTCAGAAAGGCTTTTTAGAACGTACGCCACGTGGCAGAAAAGCAACACCA
TTAGCTTATGAACATTTTGCAAAGTCGAATGAGGAGAGAGAATAA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(182-255)

RuvB C-terminal winged helix domain (WHD_RuvB)

(257-326)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6GG63

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

65.951

97.605

0.644
  ruvB Streptococcus pneumoniae TIGR4

58.182

98.802

0.575
  ruvB Streptococcus pneumoniae R6

57.879

98.802

0.572
  ruvB Streptococcus pneumoniae D39

57.879

98.802

0.572
  ruvB Helicobacter pylori 26695

56.481

97.006

0.548
  ruvB Synechocystis sp. PCC 6803

53.75

95.808

0.515