Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   SGQ75_RS08095 Genome accession   NZ_CP138880
Coordinates   1684317..1684919 (-) Length   200 a.a.
NCBI ID   WP_000271551.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 98     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1679317..1689919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGQ75_RS08075 (SGQ75_08075) yajC 1680813..1681073 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  SGQ75_RS08080 (SGQ75_08080) tgt 1681092..1682231 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  SGQ75_RS08085 (SGQ75_08085) queA 1682254..1683279 (-) 1026 WP_001008435.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  SGQ75_RS08090 (SGQ75_08090) ruvB 1683281..1684285 (-) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  SGQ75_RS08095 (SGQ75_08095) ruvA 1684317..1684919 (-) 603 WP_000271551.1 Holliday junction branch migration protein RuvA Machinery gene
  SGQ75_RS08100 (SGQ75_08100) - 1684933..1685388 (-) 456 WP_000368899.1 ACT domain-containing protein -
  SGQ75_RS08105 (SGQ75_08105) obgE 1685401..1686693 (-) 1293 WP_000496100.1 GTPase ObgE -
  SGQ75_RS08110 (SGQ75_08110) rpmA 1686913..1687197 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  SGQ75_RS08115 (SGQ75_08115) - 1687209..1687529 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  SGQ75_RS08120 (SGQ75_08120) rplU 1687535..1687843 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  SGQ75_RS08125 (SGQ75_08125) mreD 1688079..1688609 (-) 531 WP_001259930.1 rod shape-determining protein MreD -
  SGQ75_RS08130 (SGQ75_08130) mreC 1688609..1689451 (-) 843 WP_000911038.1 rod shape-determining protein MreC -
  SGQ75_RS08135 (SGQ75_08135) - 1689651..1689770 (-) 120 WP_000840602.1 hypothetical protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22253.45 Da        Isoelectric Point: 5.7132

>NTDB_id=828434 SGQ75_RS08095 WP_000271551.1 1684317..1684919(-) (ruvA) [Staphylococcus aureus strain 98]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKQLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=828434 SGQ75_RS08095 WP_000271551.1 1684317..1684919(-) (ruvA) [Staphylococcus aureus strain 98]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCAACTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(156-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.734

99.5

0.465
  ruvA Streptococcus pneumoniae R6

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae D39

46.231

99.5

0.46
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425