Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QLQ87_RS15300 Genome accession   NZ_CP124841
Coordinates   3290090..3291604 (-) Length   504 a.a.
NCBI ID   WP_125601920.1    Uniprot ID   -
Organism   Aeromonas salmonicida strain 57     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3285090..3296604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ87_RS15275 (QLQ87_15275) pncB 3285761..3286939 (-) 1179 WP_021138499.1 nicotinate phosphoribosyltransferase -
  QLQ87_RS15280 (QLQ87_15280) - 3287041..3287676 (-) 636 WP_125601929.1 nicotinamidase -
  QLQ87_RS15285 (QLQ87_15285) - 3287751..3288401 (+) 651 WP_125601926.1 NUDIX hydrolase -
  QLQ87_RS15290 (QLQ87_15290) - 3288398..3288895 (+) 498 WP_125601923.1 DUF523 domain-containing protein -
  QLQ87_RS15295 (QLQ87_15295) - 3289054..3289953 (-) 900 WP_087756888.1 acyltransferase -
  QLQ87_RS15300 (QLQ87_15300) comM 3290090..3291604 (-) 1515 WP_125601920.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QLQ87_RS15305 (QLQ87_15305) ilvG 3291989..3293635 (+) 1647 WP_125601917.1 acetolactate synthase 2 catalytic subunit -
  QLQ87_RS15310 (QLQ87_15310) ilvM 3293632..3293922 (+) 291 WP_005318216.1 acetolactate synthase 2 small subunit -
  QLQ87_RS15315 (QLQ87_15315) - 3293935..3294876 (+) 942 WP_125601912.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54665.56 Da        Isoelectric Point: 7.4493

>NTDB_id=828323 QLQ87_RS15300 WP_125601920.1 3290090..3291604(-) (comM) [Aeromonas salmonicida strain 57]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPEPQTTDSLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRDRVLAARERMLSRNGKLNNLLDSREIEDVCRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGRPAI
EKDHLIEALGYRAMDRLLSRLRSG

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=828323 QLQ87_RS15300 WP_125601920.1 3290090..3291604(-) (comM) [Aeromonas salmonicida strain 57]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTGGGGATAGCGGCGCCGCAAGTCACGGTGGAAGTTCACCTCTCCAA
CGGTCTACCCGCCTTCAACATGGTGGGATTGCCGGAAACCTCGGTGAAGGAATCCCGGGATCGGGTGCGCAGTGCCCTGC
TAAACGGCAATTTCGAGTTCCCGAGCAAACACATCACGGTCAATCTGGCCCCCGCCGACCTGCCCAAGGAGGGAGGCCGT
TTCGATCTGGCTATCGCCATCGGTATTCTCGCCGCTTCCAAGCAGATACCGGCAAAATACCTGCTAGATCACGAATTTTT
AGGGGAATTGGCCCTGACCGGCGAGATCCGTCCCGTACTCGGGGTGCTGCCCGCCGTGCTCGCCTGCCGCGATGCGGGGC
GCACCCTGCTGGTACCGAGAGAAAATGGCCCCGAAGCCTCCCTCATTCAGGATGCAGAGGTGCGTACCGCCCACCAGCTG
CTGGCCGTCACCGCCTGGCTGGCAGGCCAATATGAGCTGCCCCTGCCGGAGCCCCAGACCACGGACTCCCTGCCCGATGT
GCCGGATCTGCAGGATGTGATCGGCCAGTCACAGGCCAAGCGGGCATTGGAGATCGCTGCCGCCGGCAGCCACAACCTGC
TGTTCATAGGACCGCCCGGTACCGGCAAGAGCATGCTGGCCAGCCGTTTGCCCGGCATCTTGCCACCCCTGAGCGAGCAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTGACCCCGCGCGCCGGTCACTGGCACCACAGACCCTATCG
CACGCCCCATCACAGTGCCTCCGCCGTGGCCCTGGTGGGCGGCGGCAGCCATCCCAGACCCGGCGAAATATCCTTGGCCC
ACAACGGGGTACTCTTTCTCGACGAGCTGCCGGAGTTCGAGCGCAAGGTACTCGACTCTCTGCGCGAACCGCTGGAGACG
GGCCACATCACCATCAGCCGCGCCGCCCGTCAGGTGGATTTTCCCGCCCGCTTCCAGCTGGTGGGCGCCATGAACCCCAG
CCCCTGCGGCCACTATGGTGACGGCCAGACCCGCTCCAGCCCGGATCAGATACTTCGCTATCTCGGCAAGCTCTCCGGCC
CCTTCCTCGATCGCTTCGACCTGACGGTGGAGGTGCCGCTGCTGCCCAAGGGGAGTCTCACCGGCAAGGCGGAGCGGGGG
GAATCGAGCCAGCAAATTCGCGATCGGGTACTGGCGGCGCGGGAGCGAATGCTGAGCCGCAATGGCAAGCTCAACAATCT
GCTTGATAGTCGTGAAATCGAAGATGTTTGCCGATTATCACCGCAAGATGCCGAATTTTTGGAGAATGCCATCCAGAAGC
TGGGACTCAGCATCCGGGCCTGGCACCGCATACTGCGGGTGTCACGCACCATAGCCGATCTGGCGGGGCGACCTGCGATC
GAGAAGGATCATCTGATCGAGGCTCTCGGCTACAGGGCCATGGACAGGCTGCTGTCGCGGCTGCGCAGCGGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.147

99.603

0.629
  comM Haemophilus influenzae Rd KW20

61.66

100

0.619
  comM Vibrio campbellii strain DS40M4

62.151

99.603

0.619
  comM Glaesserella parasuis strain SC1401

60.158

100

0.605
  comM Legionella pneumophila str. Paris

51.19

100

0.512
  comM Legionella pneumophila strain ERS1305867

51.19

100

0.512
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.169

100

0.466