Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PMI20_RS02020 Genome accession   NZ_CP124732
Coordinates   436678..438171 (+) Length   497 a.a.
NCBI ID   WP_007926640.1    Uniprot ID   -
Organism   Pseudomonas sp. GM17     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 431678..443171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PMI20_RS02000 (PMI20_002000) - 432060..432788 (+) 729 WP_007926644.1 formyltransferase family protein -
  PMI20_RS02005 (PMI20_002005) - 432785..435184 (+) 2400 WP_007926643.1 PEP/pyruvate-binding domain-containing protein -
  PMI20_RS02010 (PMI20_002010) - 435181..435813 (+) 633 WP_007926642.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  PMI20_RS02015 (PMI20_002015) - 435820..436569 (+) 750 WP_007926641.1 phosphocholine cytidylyltransferase family protein -
  PMI20_RS02020 (PMI20_002020) comM 436678..438171 (+) 1494 WP_007926640.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PMI20_RS02025 (PMI20_002025) - 438178..439392 (-) 1215 WP_007926638.1 aldose 1-epimerase family protein -
  PMI20_RS02030 (PMI20_002030) - 439495..440070 (-) 576 WP_007926636.1 TetR/AcrR family transcriptional regulator -
  PMI20_RS02035 (PMI20_002035) - 440185..441111 (+) 927 WP_007926634.1 ABC transporter six-transmembrane domain-containing protein -
  PMI20_RS02040 (PMI20_002040) - 441116..442087 (-) 972 WP_007926632.1 Ca2+-dependent phosphoinositide-specific phospholipase C -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53479.43 Da        Isoelectric Point: 8.0958

>NTDB_id=827776 PMI20_RS02020 WP_007926640.1 436678..438171(+) (comM) [Pseudomonas sp. GM17]
MSLAIVHSRAQTGVQAPAVSVEVHLANGLPALTLVGLPEAAVKESKDRVRSAILNAGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPTLALEEVECLGELALSGAVRPVRGVLPAALAARQAGRTLMVPRANAEEACLASGLKVIAVEHL
LEAVAHFNGHTPIEPYVSDGLLYQNRPYPDLNEVQGQLAAKRALLVAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLEE
QEALEVAAIQSVTSHTPLSHWPQRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GQIVIARARDRVHFPARFQLVAAMNPCPCGYLGEPSGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVARESTALNPKPQA
GDNTAQAAALVARARERQQRRQGCANAFLDLPGLRRHCQLSTTDERWLETACERLTLSLRAAHRLLKVARTLADLEQAEQ
ISREHLAEALQYRPAAS

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=827776 PMI20_RS02020 WP_007926640.1 436678..438171(+) (comM) [Pseudomonas sp. GM17]
ATGTCTCTGGCCATTGTCCACAGTCGTGCCCAGACCGGCGTGCAAGCGCCGGCTGTGTCGGTCGAAGTCCATCTGGCCAA
CGGCCTGCCGGCCCTGACCCTGGTGGGCCTGCCCGAAGCGGCGGTCAAGGAAAGCAAGGACCGGGTGCGCAGCGCCATTC
TCAATGCCGGCTTCGATTTTCCGGCCCGGCGCATCACCCTCAACCTCGCCCCGGCCGACCTGCCCAAGGACGGCGGGCGC
TTCGATTTGGCCATTGCCCTGGGCATTCTCGCCGCCAGCGTGCAGGTGCCGACCCTGGCCCTGGAGGAAGTCGAATGCCT
GGGCGAGCTGGCGCTTTCCGGCGCGGTTCGACCGGTGCGCGGCGTGCTGCCGGCAGCCCTGGCCGCGCGCCAGGCTGGAC
GTACGCTGATGGTGCCGCGCGCGAATGCCGAGGAAGCCTGCCTGGCGTCGGGACTGAAGGTGATCGCGGTCGAGCACTTG
CTGGAAGCCGTTGCGCATTTCAACGGCCATACACCGATCGAACCCTATGTTTCGGATGGCCTGCTCTACCAGAACCGGCC
CTACCCCGACCTGAATGAAGTACAGGGCCAGCTGGCCGCCAAACGCGCGCTGCTGGTAGCCGCCGCCGGCGCGCACAACC
TGCTGTTCAGTGGTCCGCCGGGCACCGGCAAGACCTTGCTGGCCAGCCGCCTGCCCGGCCTGTTGCCGCCGCTGGAGGAG
CAGGAAGCCCTGGAAGTGGCCGCCATCCAGTCGGTCACCAGCCACACTCCGCTGAGCCATTGGCCGCAGCGGCCGTTTCG
CCAGCCGCACCACTCTGCGTCAGGGCCAGCCCTGGTGGGAGGAGGCTCGAAACCACAACCCGGGGAAATTACCCTGGCCC
ACCACGGTGTGCTGTTTCTCGATGAGTTGCCGGAATTCGATCGCAAGGTATTGGAGGTGCTGCGCGAGCCGCTGGAGTCT
GGGCAGATCGTCATCGCCCGAGCTCGCGACCGGGTGCATTTTCCGGCGCGTTTCCAGCTGGTGGCGGCGATGAACCCTTG
TCCCTGTGGATATCTTGGCGAGCCCAGTGGCCGCTGCCGCTGCACCCCGGAACAGATCCAGCGTTATCGCAACAAACTCT
CCGGGCCGCTGCTCGACCGCATCGACCTGCACCTAACCGTGGCCCGGGAAAGCACCGCCCTCAACCCCAAGCCCCAGGCT
GGGGATAACACCGCGCAAGCCGCGGCCCTAGTGGCCCGCGCCAGGGAGCGGCAACAACGGCGCCAGGGTTGCGCCAATGC
TTTTCTCGACCTGCCGGGCCTGCGCCGGCATTGCCAGTTATCCACAACCGACGAGCGCTGGCTGGAAACCGCCTGCGAAC
GCCTGACCCTGTCCCTGCGCGCCGCCCACCGCCTGCTCAAGGTCGCCCGTACCCTGGCCGACCTCGAGCAGGCCGAACAG
ATCAGCCGCGAGCACCTGGCCGAAGCGCTGCAATACCGGCCGGCCGCGAGTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.556

99.598

0.553
  comM Vibrio cholerae strain A1552

55.556

99.598

0.553
  comM Glaesserella parasuis strain SC1401

54.691

100

0.551
  comM Haemophilus influenzae Rd KW20

54.4

100

0.547
  comM Legionella pneumophila str. Paris

49.194

99.799

0.491
  comM Legionella pneumophila strain ERS1305867

49.194

99.799

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.429

100

0.471