Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   R8507_RS06250 Genome accession   NZ_AP026925
Coordinates   1230914..1231483 (-) Length   189 a.a.
NCBI ID   WP_161801419.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700097     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1225914..1236483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8507_RS06225 (PC0094_12210) - 1226795..1227037 (+) 243 WP_000710764.1 type B 50S ribosomal protein L31 -
  R8507_RS06230 (PC0094_12220) - 1227094..1227312 (-) 219 WP_000028149.1 hypothetical protein -
  R8507_RS06235 - 1227309..1228203 (-) 895 Protein_1234 IS630 family transposase -
  R8507_RS06240 (PC0094_12250) gdhA 1228889..1230235 (+) 1347 WP_044812855.1 NADP-specific glutamate dehydrogenase -
  R8507_RS06245 (PC0094_12260) - 1230731..1230901 (-) 171 WP_000711939.1 hypothetical protein -
  R8507_RS06250 (PC0094_12270) comA 1230914..1231483 (-) 570 WP_161801419.1 ATP-binding cassette domain-containing protein Regulator
  R8507_RS06255 - 1231509..1232313 (-) 805 Protein_1238 IS5 family transposase -
  R8507_RS06260 - 1232762..1233458 (+) 697 Protein_1239 IS630 family transposase -
  R8507_RS06265 (PC0094_12310) - 1233503..1233952 (-) 450 WP_000424224.1 YhcH/YjgK/YiaL family protein -
  R8507_RS06270 (PC0094_12320) - 1234457..1234912 (-) 456 WP_001000318.1 HIT family protein -
  R8507_RS06275 (PC0094_12330) - 1234934..1236394 (-) 1461 WP_317642929.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 21223.67 Da        Isoelectric Point: 8.9067

>NTDB_id=82689 R8507_RS06250 WP_161801419.1 1230914..1231483(-) (comA) [Streptococcus pneumoniae strain PZ900700097]
MPSRLYKIDTGKVLFDGVNINQIDKKILSQNLGVVPQDSFLLNRSILDNITLKHEVTSQKIEEVCKAVQIYDEIMAMPMK
FNTIISEMGSNISGGQRQRIALARALINNPSIVILDEATSALDTINEERITKYIQSQGCTQIIIAHRLSTIKDADIIFVM
KGGKIVESGNHKYLMTLGGEYYSLYTKRK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=82689 R8507_RS06250 WP_161801419.1 1230914..1231483(-) (comA) [Streptococcus pneumoniae strain PZ900700097]
ATACCATCAAGATTATATAAGATTGATACAGGAAAAGTTTTATTTGATGGTGTAAATATTAATCAAATAGATAAAAAAAT
ATTAAGTCAAAATTTAGGAGTAGTTCCACAGGATTCGTTTTTATTGAACAGAAGTATTCTTGATAATATAACTTTAAAGC
ACGAAGTTACTTCACAAAAGATAGAGGAAGTTTGTAAAGCAGTTCAAATCTATGATGAAATCATGGCTATGCCGATGAAA
TTTAATACTATCATCTCAGAGATGGGGTCAAATATTTCAGGTGGGCAAAGGCAACGGATAGCACTGGCACGTGCATTAAT
AAATAATCCTAGTATTGTAATTTTAGATGAAGCAACTAGTGCATTAGACACTATTAATGAGGAAAGAATAACAAAGTATA
TACAAAGTCAGGGTTGTACTCAAATAATTATAGCTCATAGATTGTCAACGATTAAGGATGCGGATATTATTTTTGTAATG
AAAGGTGGTAAGATTGTTGAGTCAGGAAATCATAAGTACTTAATGACTCTTGGTGGAGAGTACTACAGCTTATATACAAA
AAGGAAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(4-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis NCTC 12261

42.473

98.413

0.418
  comA Streptococcus gordonii str. Challis substr. CH1

42.021

99.471

0.418
  comA Streptococcus mitis SK321

41.935

98.413

0.413
  comA/nlmT Streptococcus mutans UA159

41.848

97.354

0.407
  comA Streptococcus pneumoniae R6

41.398

98.413

0.407
  comA Streptococcus pneumoniae Rx1

41.398

98.413

0.407
  comA Streptococcus pneumoniae D39

41.398

98.413

0.407
  comA Streptococcus pneumoniae TIGR4

40.323

98.413

0.397
  rcrQ Streptococcus mutans UA159

37.037

100

0.37

Multiple sequence alignment