Detailed information NTG0826832

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: SGN29_RS07770
• Genome accession: NZ_CP138576
• Coordinates: 1632327..1633331 (-)
• Length: 334 a.a.
• NCBI ID: WP_001005767.1
• Uniprot ID: Q6GG63
• Organism: Staphylococcus aureus strain MFDS1022333
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1627327..1638331

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SGN29_RS07755	yajC	1629859..1630119 (-)	261	WP_001160682.1	preprotein translocase subunit YajC	-
SGN29_RS07760	tgt	1630138..1631277 (-)	1140	WP_001112045.1	tRNA guanosine(34) transglycosylase Tgt	-
SGN29_RS07765	queA	1631300..1632325 (-)	1026	WP_001019178.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
SGN29_RS07770	ruvB	1632327..1633331 (-)	1005	WP_001005767.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
SGN29_RS07775	ruvA	1633363..1633965 (-)	603	WP_000271551.1	Holliday junction branch migration protein RuvA	Machinery gene
SGN29_RS07780	-	1633979..1634434 (-)	456	WP_000368902.1	ACT domain-containing protein	-
SGN29_RS07785	obgE	1634447..1635739 (-)	1293	WP_000496100.1	GTPase ObgE	-
SGN29_RS07790	rpmA	1636090..1636374 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
SGN29_RS07795	-	1636386..1636706 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
SGN29_RS07800	rplU	1636712..1637020 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
SGN29_RS07805	mreD	1637382..1637912 (-)	531	WP_045177814.1	rod shape-determining protein MreD	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 37718.00 Da
• Isoelectric Point: 5.0865

>NTDB_id=826832 SGN29_RS07770 WP_001005767.1 1632327..1633331(-) (ruvB) [Staphylococcus aureus strain MFDS1022333]
MNERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPPGLGKTTLSNIIANEMEVN
IRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATT
RAGSLTGPLRDRFGVHLRLEYYNESDLKEIIIRTAEVLGTGIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQI
YIETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDTIAVTIGEERITIEDVYEPFLIQKGFLERTPRGRKATP
LAYEHFAKSNEERE

Nucleotide

• Length: 1005 bp

>NTDB_id=826832 SGN29_RS07770 WP_001005767.1 1632327..1633331(-) (ruvB) [Staphylococcus aureus strain MFDS1022333]
ATGAATGAGCGTATGGTTGATCAATCAATGCATAGTGAAGAAACTGATTTCGAATTGTCGCTTAGACCTACGAGATTACG
ACAATATATTGGTCAAAATTCAATAAAAAGTAATTTAGAAGTATTTATTAAAGCGGCTAAACTTCGTCATGAACCATTAG
ATCATGTATTGCTTTTTGGCCCCCCTGGATTAGGTAAGACAACATTATCTAATATCATTGCCAATGAAATGGAAGTTAAT
ATACGTACAGTATCAGGGCCTTCATTAGAAAGACCTGGTGATTTGGCTGCAATTTTATCAGGACTTCAACCTGGAGATGT
TTTGTTTATTGATGAAATACACAGACTGAGTAGTGTTGTTGAAGAAGTGTTATACCCTGCAATGGAAGATTTCTTTTTAG
ATATTATCATTGGTAAAGGCGATGAGGCTAGAAGTATCCGTATCGACTTACCTCCATTCACTTTGGTAGGTGCAACAACG
CGAGCTGGCAGCTTAACAGGTCCACTAAGGGATCGATTTGGTGTGCACTTAAGATTAGAATATTATAATGAATCAGATTT
AAAAGAAATCATTATTAGAACAGCTGAGGTTTTAGGCACAGGTATTGATGAAGAAAGTGCCATTGAACTTGCTAAACGTT
CTAGAGGGACTCCAAGAGTAGCAAATCGACTATTGAAGCGGGTAAGAGACTTCCAGCAAGTGAATGAAGATGAACAAATA
TACATTGAAACAACGAAGCACGCATTAGGTTTACTTCAAGTTGATCAACACGGACTAGATTACATTGATCATAAAATGAT
GAACTGTATTATTAAGCAGTATAATGGTGGACCTGTTGGTTTAGATACGATTGCCGTAACAATTGGTGAAGAACGTATTA
CAATTGAGGACGTTTATGAGCCATTTCTTATTCAGAAAGGCTTTTTAGAACGTACGCCACGTGGCAGAAAAGCAACACCA
TTAGCTTATGAACATTTTGCAAAGTCGAATGAGGAGAGAGAATAA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (182-255)

• RuvB C-terminal winged helix domain (WHD_RuvB) (257-326)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (21-179)

3D structure

• AlphaFold DB: Q6GG63

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	65.951	97.605	0.644
ruvB	Streptococcus pneumoniae TIGR4	58.182	98.802	0.575
ruvB	Streptococcus pneumoniae R6	57.879	98.802	0.572
ruvB	Streptococcus pneumoniae D39	57.879	98.802	0.572
ruvB	Helicobacter pylori 26695	56.481	97.006	0.548
ruvB	Synechocystis sp. PCC 6803	53.75	95.808	0.515