Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   SGN29_RS07775 Genome accession   NZ_CP138576
Coordinates   1633363..1633965 (-) Length   200 a.a.
NCBI ID   WP_000271551.1    Uniprot ID   -
Organism   Staphylococcus aureus strain MFDS1022333     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1628363..1638965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGN29_RS07755 yajC 1629859..1630119 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  SGN29_RS07760 tgt 1630138..1631277 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  SGN29_RS07765 queA 1631300..1632325 (-) 1026 WP_001019178.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  SGN29_RS07770 ruvB 1632327..1633331 (-) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  SGN29_RS07775 ruvA 1633363..1633965 (-) 603 WP_000271551.1 Holliday junction branch migration protein RuvA Machinery gene
  SGN29_RS07780 - 1633979..1634434 (-) 456 WP_000368902.1 ACT domain-containing protein -
  SGN29_RS07785 obgE 1634447..1635739 (-) 1293 WP_000496100.1 GTPase ObgE -
  SGN29_RS07790 rpmA 1636090..1636374 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  SGN29_RS07795 - 1636386..1636706 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  SGN29_RS07800 rplU 1636712..1637020 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  SGN29_RS07805 mreD 1637382..1637912 (-) 531 WP_045177814.1 rod shape-determining protein MreD -
  SGN29_RS07810 mreC 1637912..1638754 (-) 843 WP_000911041.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22253.45 Da        Isoelectric Point: 5.7132

>NTDB_id=826833 SGN29_RS07775 WP_000271551.1 1633363..1633965(-) (ruvA) [Staphylococcus aureus strain MFDS1022333]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKQLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=826833 SGN29_RS07775 WP_000271551.1 1633363..1633965(-) (ruvA) [Staphylococcus aureus strain MFDS1022333]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCAACTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(156-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.734

99.5

0.465
  ruvA Streptococcus pneumoniae R6

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae D39

46.231

99.5

0.46
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425