Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QF117_RS19015 Genome accession   NZ_CP124614
Coordinates   2873115..2873672 (-) Length   185 a.a.
NCBI ID   WP_017035367.1    Uniprot ID   A0A1E5BES0
Organism   Vibrio sp. YMD68     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2868115..2878672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QF117_RS18995 (QF117_18995) - 2868255..2868614 (-) 360 WP_282387613.1 MSHA biogenesis protein MshK -
  QF117_RS19000 (QF117_19000) pilO 2868669..2869313 (-) 645 WP_282387615.1 type 4a pilus biogenesis protein PilO -
  QF117_RS19005 (QF117_19005) - 2869313..2870749 (-) 1437 WP_282387616.1 MSHA biogenesis protein MshI -
  QF117_RS19010 (QF117_19010) csrD 2870771..2872771 (-) 2001 WP_282387618.1 RNase E specificity factor CsrD -
  QF117_RS19015 (QF117_19015) ssb 2873115..2873672 (-) 558 WP_017035367.1 single-stranded DNA-binding protein Machinery gene
  QF117_RS19020 (QF117_19020) qstR 2873960..2874607 (+) 648 WP_282387621.1 LuxR C-terminal-related transcriptional regulator Regulator
  QF117_RS19025 (QF117_19025) galU 2874725..2875597 (+) 873 WP_282387623.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  QF117_RS19030 (QF117_19030) uvrA 2875793..2878615 (+) 2823 WP_282387625.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20633.75 Da        Isoelectric Point: 5.7627

>NTDB_id=826788 QF117_RS19015 WP_017035367.1 2873115..2873672(-) (ssb) [Vibrio sp. YMD68]
MASRGVNKVIIMGNLGQDPEVKYTANGSAIANITVATSETWRDKQTGEQREKTEWHRVVLFGKTAEIAGEYLRKGSQVYL
EGQLQTRKWQDQSGQDRYSTEVVVQWPAGQMQLLGGRGQGGGGQQASQQQNNNWGQPQQPAMQQQQPAMQQPQSAPQHKP
AQQAPQQAQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=826788 QF117_RS19015 WP_017035367.1 2873115..2873672(-) (ssb) [Vibrio sp. YMD68]
ATGGCAAGCCGTGGCGTAAATAAAGTCATCATTATGGGTAATCTTGGGCAAGATCCTGAGGTTAAGTACACTGCCAATGG
TAGTGCGATTGCAAATATTACAGTCGCCACTTCTGAAACTTGGCGTGACAAGCAAACTGGTGAACAACGCGAAAAGACAG
AGTGGCACCGTGTTGTGTTATTTGGAAAAACAGCTGAAATTGCAGGTGAATACTTACGTAAGGGCTCTCAAGTTTATCTT
GAAGGTCAACTGCAAACACGTAAGTGGCAAGATCAAAGTGGTCAAGATCGTTACTCAACTGAAGTTGTTGTTCAGTGGCC
AGCAGGTCAAATGCAGCTATTAGGTGGGCGTGGCCAAGGTGGTGGCGGTCAACAGGCGAGTCAGCAGCAAAATAATAACT
GGGGCCAACCTCAGCAGCCAGCCATGCAGCAACAGCAGCCAGCGATGCAACAGCCTCAATCGGCTCCTCAGCACAAACCG
GCTCAACAAGCTCCACAGCAAGCTCAGCCTCAATATAATGAGCCACCAATGGATTTCGATGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E5BES0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

70.681

100

0.73
  ssb Glaesserella parasuis strain SC1401

50.785

100

0.524
  ssb Neisseria meningitidis MC58

46.111

97.297

0.449
  ssb Neisseria gonorrhoeae MS11

46.111

97.297

0.449